Wall clock time and date at job start Mon Mar 30 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.47095 * 125.56309 * 269.72042 * 5 4 3 7 7 C 1.54095 * 103.77488 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.33711 * 118.86830 * 7 6 5 9 9 C 1.50705 * 110.82036 * 241.54404 * 7 6 5 10 10 H 1.07997 * 119.99596 * 356.21996 * 9 7 6 11 11 C 1.37876 * 119.99697 * 176.21835 * 9 7 6 12 12 N 1.31518 * 119.99574 * 180.02562 * 11 9 7 13 13 Si 1.86794 * 120.00354 * 0.02562 * 11 9 7 14 14 H 1.48508 * 109.46801 * 89.99931 * 13 11 9 15 15 H 1.48498 * 109.47186 * 209.99769 * 13 11 9 16 16 H 1.48502 * 109.47135 * 330.00153 * 13 11 9 17 17 O 1.45700 * 104.01216 * 0.32480 * 7 6 5 18 18 C 1.33775 * 109.47419 * 359.78436 * 17 7 6 19 19 O 1.21504 * 123.07257 * 180.02562 * 18 17 7 20 20 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 24 24 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 25 25 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 26 26 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 27 27 H 1.08996 * 110.56129 * 298.60386 * 6 5 4 28 28 H 1.08994 * 110.56573 * 61.46461 * 6 5 4 29 29 H 0.96994 * 119.99801 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1529 -0.8786 -1.4765 7 6 4.6204 -0.9679 -2.9422 8 1 5.6116 -1.4182 -2.9969 9 6 3.6378 -1.7545 -3.7709 10 1 2.7821 -2.2157 -3.3004 11 6 3.8313 -1.8854 -5.1297 12 7 2.9735 -2.5714 -5.8530 13 14 5.3118 -1.0882 -5.9433 14 1 6.4509 -2.0411 -5.9405 15 1 4.9724 -0.7267 -7.3431 16 1 5.6891 0.1366 -5.1932 17 8 4.6649 0.4200 -3.3834 18 6 4.2892 1.2196 -2.3789 19 8 4.2366 2.4294 -2.4786 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.6886 1.8464 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 3.9786 2.1764 0.0890 26 1 3.8515 0.5681 0.8409 27 1 4.9131 -1.2795 -0.8062 28 1 3.2080 -1.4055 -1.3443 29 1 3.1099 -2.6638 -6.8088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219077191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:07 Heat of formation + Delta-G solvation = -112.221177 kcal Electronic energy + Delta-G solvation = -15025.961897 eV Core-core repulsion = 12336.086366 eV Total energy + Delta-G solvation = -2689.875531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.44620 -37.73728 -36.27299 -34.67619 -32.76463 -30.48274 -28.87657 -26.28433 -24.88064 -23.14982 -21.48930 -20.03584 -17.45231 -16.65191 -16.41484 -15.90040 -15.58120 -15.21568 -14.65829 -14.29369 -14.04383 -13.17188 -12.81581 -12.50990 -12.34178 -12.20343 -11.74522 -11.49512 -11.10755 -10.88023 -10.80732 -10.36554 -9.95326 -9.56942 -9.40563 -9.12077 -8.76337 -8.20611 -6.31724 -4.45551 3.19679 3.27819 3.45523 3.59656 3.64368 3.95937 4.36312 4.61324 5.12000 5.19571 5.23599 5.31348 5.44277 5.50003 5.52764 5.59317 5.80030 5.81218 5.94244 6.27689 6.49735 6.77524 7.11040 7.28222 7.31541 8.15154 8.41280 8.70109 8.92220 9.28613 10.77225 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.010749 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.079234 B = 2604.307042 C = 3086.711973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.041 3.959 4 C 0.153 3.847 5 N -0.632 5.632 6 C 0.090 3.910 7 C 0.157 3.843 8 H 0.072 0.928 9 C -0.538 4.538 10 H 0.088 0.912 11 C 0.091 3.909 12 N -0.875 5.875 13 Si 0.867 3.133 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.226 1.226 17 O -0.332 6.332 18 C 0.637 3.363 19 O -0.566 6.566 20 H 0.085 0.915 21 H 0.035 0.965 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 3.454 11.934 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.037 4.037 4 C 0.031 3.969 5 N -0.379 5.379 6 C -0.033 4.033 7 C 0.105 3.895 8 H 0.090 0.910 9 C -0.574 4.574 10 H 0.106 0.894 11 C -0.117 4.117 12 N -0.510 5.510 13 Si 0.693 3.307 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.150 1.150 17 O -0.242 6.242 18 C 0.394 3.606 19 O -0.456 6.456 20 H 0.103 0.897 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.370 3.869 11.466 12.106 hybrid contribution 0.230 0.386 -0.464 0.646 sum -0.140 4.255 11.001 11.796 Atomic orbital electron populations 1.22701 0.81337 1.02699 0.99528 1.87921 1.19471 1.27406 1.95324 1.23086 0.94728 0.85354 1.00528 1.21150 0.91806 0.99179 0.84808 1.47981 1.69755 1.08012 1.12177 1.22816 1.02567 0.80761 0.97143 1.21970 0.99237 0.77553 0.90764 0.91013 1.21075 1.11359 1.31727 0.93254 0.89375 1.25041 0.96507 0.92914 0.97210 1.69898 1.35606 1.38265 1.07235 0.86997 0.82388 0.81903 0.79432 1.20313 1.20937 1.14955 1.87806 1.79242 1.22080 1.35081 1.18978 0.75741 0.85972 0.79952 1.90866 1.60678 1.10458 1.83600 0.89657 0.94612 0.94097 0.92672 0.92658 0.88665 0.89686 0.91510 0.88852 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 15 2 O -0.38 -6.01 10.29 -35.23 -0.36 -6.38 15 3 C 0.04 0.59 6.28 37.16 0.23 0.82 15 4 C 0.15 2.24 6.40 -4.04 -0.03 2.21 15 5 N -0.63 -12.21 2.91 -178.85 -0.52 -12.73 15 6 C 0.09 1.72 7.34 -3.15 -0.02 1.70 15 7 C 0.16 3.64 3.06 -27.31 -0.08 3.55 15 8 H 0.07 1.54 7.67 -51.92 -0.40 1.14 15 9 C -0.54 -14.57 9.43 -34.44 -0.32 -14.89 15 10 H 0.09 2.53 7.65 -52.49 -0.40 2.13 15 11 C 0.09 2.55 5.47 -17.82 -0.10 2.45 15 12 N -0.87 -25.80 13.96 55.43 0.77 -25.02 15 13 Si 0.87 21.32 27.09 -169.99 -4.61 16.71 15 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 15 H -0.28 -7.01 7.11 56.52 0.40 -6.60 15 16 H -0.23 -5.65 5.36 56.52 0.30 -5.35 15 17 O -0.33 -8.44 7.81 -37.84 -0.30 -8.74 15 18 C 0.64 15.08 8.85 53.71 0.48 15.56 15 19 O -0.57 -14.46 17.54 -19.11 -0.34 -14.80 15 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 15 22 H 0.04 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.10 1.30 7.93 -51.93 -0.41 0.89 15 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.09 1.86 7.12 -51.93 -0.37 1.49 15 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 LS Contribution 252.67 15.07 3.81 3.81 Total: -1.00 -32.96 252.67 -4.04 -37.01 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.77 Total: -2.80 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 1.27 Total: 12.94 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.25 Total: -37.76 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.99 Total: -29.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.61 Total: 16.71 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.96 -4.04 -37.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219077191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.212 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds