Wall clock time and date at job start Mon Mar 30 2020 02:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.47095 * 125.56309 * 269.72042 * 5 4 3 7 7 C 1.54095 * 103.77488 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.33711 * 118.86830 * 7 6 5 9 9 C 1.50705 * 110.82036 * 241.54404 * 7 6 5 10 10 H 1.07997 * 119.99596 * 356.21996 * 9 7 6 11 11 C 1.37876 * 119.99697 * 176.21835 * 9 7 6 12 12 N 1.31518 * 119.99574 * 180.02562 * 11 9 7 13 13 Si 1.86794 * 120.00354 * 0.02562 * 11 9 7 14 14 H 1.48508 * 109.46801 * 89.99931 * 13 11 9 15 15 H 1.48498 * 109.47186 * 209.99769 * 13 11 9 16 16 H 1.48502 * 109.47135 * 330.00153 * 13 11 9 17 17 O 1.45700 * 104.01216 * 0.32480 * 7 6 5 18 18 C 1.33775 * 109.47419 * 359.78436 * 17 7 6 19 19 O 1.21504 * 123.07257 * 180.02562 * 18 17 7 20 20 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 24 24 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 25 25 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 26 26 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 27 27 H 1.08996 * 110.56129 * 298.60386 * 6 5 4 28 28 H 1.08994 * 110.56573 * 61.46461 * 6 5 4 29 29 H 0.96994 * 119.99801 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1529 -0.8786 -1.4765 7 6 4.6204 -0.9679 -2.9422 8 1 5.6116 -1.4182 -2.9969 9 6 3.6378 -1.7545 -3.7709 10 1 2.7821 -2.2157 -3.3004 11 6 3.8313 -1.8854 -5.1297 12 7 2.9735 -2.5714 -5.8530 13 14 5.3118 -1.0882 -5.9433 14 1 6.4509 -2.0411 -5.9405 15 1 4.9724 -0.7267 -7.3431 16 1 5.6891 0.1366 -5.1932 17 8 4.6649 0.4200 -3.3834 18 6 4.2892 1.2196 -2.3789 19 8 4.2366 2.4294 -2.4786 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.6886 1.8464 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 3.9786 2.1764 0.0890 26 1 3.8515 0.5681 0.8409 27 1 4.9131 -1.2795 -0.8062 28 1 3.2080 -1.4055 -1.3443 29 1 3.1099 -2.6638 -6.8088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219077191.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:07 Heat of formation + Delta-G solvation = -136.726204 kcal Electronic energy + Delta-G solvation = -15027.024514 eV Core-core repulsion = 12336.086366 eV Total energy + Delta-G solvation = -2690.938148 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.19614 -38.91056 -38.13489 -36.21624 -34.87743 -31.99041 -30.53661 -27.44120 -26.60231 -24.48824 -23.34018 -21.66119 -19.40284 -18.27903 -17.78379 -17.45810 -17.08970 -16.80543 -16.11763 -15.89360 -15.62046 -14.95827 -14.64101 -14.14925 -13.88422 -13.45584 -13.01921 -12.89322 -12.77169 -12.73722 -12.32878 -12.01250 -11.92551 -11.33115 -11.09047 -10.86207 -10.64073 -9.73690 -8.46439 -6.63617 1.32763 1.34015 1.62290 1.77687 1.92774 2.33021 2.71047 2.87776 3.25497 3.77304 3.96944 4.05417 4.28487 4.33420 4.42226 4.51370 4.53637 4.73148 4.76592 4.85956 4.94019 5.14739 5.33528 5.61340 6.02048 6.21549 6.48750 6.67314 7.12841 7.17535 8.66221 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.010749 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.079234 B = 2604.307042 C = 3086.711973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.042 3.958 4 C 0.143 3.857 5 N -0.619 5.619 6 C 0.099 3.901 7 C 0.151 3.849 8 H 0.097 0.903 9 C -0.543 4.543 10 H 0.057 0.943 11 C 0.039 3.961 12 N -0.920 5.920 13 Si 0.928 3.072 14 H -0.254 1.254 15 H -0.289 1.289 16 H -0.232 1.232 17 O -0.357 6.357 18 C 0.627 3.373 19 O -0.594 6.594 20 H 0.091 0.909 21 H 0.065 0.935 22 H 0.028 0.972 23 H 0.024 0.976 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 3.758 13.898 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C -0.036 4.036 4 C 0.023 3.977 5 N -0.366 5.366 6 C -0.024 4.024 7 C 0.098 3.902 8 H 0.114 0.886 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.164 4.164 12 N -0.558 5.558 13 Si 0.751 3.249 14 H -0.179 1.179 15 H -0.215 1.215 16 H -0.156 1.156 17 O -0.268 6.268 18 C 0.383 3.617 19 O -0.486 6.486 20 H 0.110 0.890 21 H 0.084 0.916 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.731 4.151 13.476 14.120 hybrid contribution -0.218 0.288 -0.985 1.049 sum 0.513 4.439 12.491 13.266 Atomic orbital electron populations 1.22849 0.80022 1.03473 1.00361 1.87873 1.21060 1.28238 1.95495 1.23114 0.94459 0.85027 1.00994 1.21629 0.92114 1.00350 0.83571 1.48139 1.68347 1.07812 1.12305 1.22803 1.03465 0.80659 0.95471 1.22069 0.99432 0.76209 0.92451 0.88592 1.21311 1.11140 1.31787 0.93685 0.92442 1.25856 0.99048 0.93428 0.98056 1.70007 1.37696 1.40372 1.07691 0.86051 0.79922 0.81042 0.77835 1.17895 1.21474 1.15567 1.87706 1.79633 1.22790 1.36668 1.19152 0.76131 0.85732 0.80718 1.90831 1.62042 1.11522 1.84190 0.89038 0.91642 0.95347 0.95749 0.88582 0.87571 0.85952 0.86674 0.89866 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 15 2 O -0.41 -12.02 10.29 -148.98 -1.53 -13.55 15 3 C 0.04 1.09 6.28 71.98 0.45 1.54 15 4 C 0.14 3.73 6.40 86.38 0.55 4.28 15 5 N -0.62 -22.52 2.91 -951.45 -2.77 -25.29 15 6 C 0.10 3.51 7.34 86.64 0.64 4.14 15 7 C 0.15 6.75 3.06 30.22 0.09 6.84 15 8 H 0.10 3.84 7.67 -2.38 -0.02 3.82 15 9 C -0.54 -29.59 9.43 25.60 0.24 -29.35 15 10 H 0.06 3.40 7.65 -2.91 -0.02 3.38 15 11 C 0.04 2.20 5.47 84.65 0.46 2.67 15 12 N -0.92 -55.41 13.96 21.45 0.30 -55.11 15 13 Si 0.93 44.05 27.09 68.60 1.86 45.91 15 14 H -0.25 -11.05 7.11 99.48 0.71 -10.34 15 15 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 16 H -0.23 -11.18 5.36 99.48 0.53 -10.65 15 17 O -0.36 -17.84 7.81 -47.35 -0.37 -18.21 15 18 C 0.63 29.01 8.85 129.91 1.15 30.16 15 19 O -0.59 -30.04 17.54 19.67 0.35 -29.69 15 20 H 0.09 1.99 8.14 -2.39 -0.02 1.98 15 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.03 0.72 8.14 -2.39 -0.02 0.70 15 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.11 2.57 7.93 -2.39 -0.02 2.55 15 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.12 3.07 8.14 -2.39 -0.02 3.05 15 28 H 0.08 3.18 7.12 -2.39 -0.02 3.17 15 29 H 0.27 15.38 8.31 -92.71 -0.77 14.60 15 Total: -1.00 -72.28 252.67 3.63 -68.66 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.96 Total: 5.07 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 4.83 Total: 22.22 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.47 Total: -80.41 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -1.56 Total: -61.46 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.86 Total: 45.91 kcal Total: -72.28 3.63 -68.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219077191.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.071 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds