Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47784 * 2 1 4 4 N 1.35639 * 125.36005 * 264.98181 * 3 2 1 5 5 H 0.96997 * 124.69404 * 0.02820 * 4 3 2 6 6 C 1.38153 * 110.61818 * 179.97438 * 4 3 2 7 7 C 1.39118 * 132.80479 * 179.97438 * 6 4 3 8 8 C 1.37870 * 119.97205 * 179.97438 * 7 6 4 9 9 C 1.38675 * 120.62155 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.25131 * 359.97438 * 9 8 7 11 11 C 1.39191 * 119.69336 * 0.27992 * 10 9 8 12 12 C 1.38898 * 125.35694 * 84.97269 * 3 2 1 13 13 C 1.40893 * 126.93094 * 0.02720 * 12 3 2 14 14 H 1.08005 * 119.99922 * 31.00483 * 13 12 3 15 15 C 1.39737 * 120.00105 * 211.00822 * 13 12 3 16 16 N 1.31052 * 119.99824 * 19.41403 * 15 13 12 17 17 Si 1.86798 * 119.99857 * 199.41960 * 15 13 12 18 18 H 1.48500 * 109.47251 * 59.99912 * 17 15 13 19 19 H 1.48512 * 109.46909 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47190 * 299.99284 * 17 15 13 21 21 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46593 * 300.00247 * 1 2 3 23 23 H 1.08997 * 109.46894 * 59.99574 * 1 2 3 24 24 H 1.09012 * 109.46999 * 239.99958 * 2 1 3 25 25 H 1.09001 * 109.47370 * 120.00397 * 2 1 3 26 26 H 1.07999 * 120.02035 * 359.97438 * 7 6 4 27 27 H 1.08000 * 119.69109 * 180.02562 * 8 7 6 28 28 H 1.08003 * 119.87665 * 180.02562 * 9 8 7 29 29 H 1.07996 * 120.15197 * 179.97438 * 10 9 8 30 30 H 0.97004 * 119.99737 * 174.97682 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3854 2.1285 -1.1019 5 1 2.3499 1.7900 -2.0103 6 6 2.8014 3.3985 -0.7518 7 6 3.2546 4.4834 -1.4954 8 6 3.6082 5.6546 -0.8598 9 6 3.5177 5.7648 0.5196 10 6 3.0708 4.7005 1.2736 11 6 2.7157 3.5107 0.6446 12 6 2.2069 2.2115 1.1284 13 6 1.9536 1.8465 2.4655 14 1 2.0747 0.8195 2.7771 15 6 1.5455 2.8131 3.3884 16 7 1.0353 3.9451 2.9692 17 14 1.7272 2.4917 5.2195 18 1 3.1593 2.2686 5.5432 19 1 1.2251 3.6643 5.9801 20 1 0.9422 1.2871 5.5910 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.3294 4.4083 -2.5702 27 1 3.9591 6.4941 -1.4416 28 1 3.7975 6.6881 1.0051 29 1 3.0013 4.7879 2.3478 30 1 0.6852 4.5854 3.6083 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222581043.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = 36.651250 kcal Electronic energy + Delta-G solvation = -14002.561696 eV Core-core repulsion = 11762.283772 eV Total energy + Delta-G solvation = -2240.277924 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65049 -35.80284 -33.58765 -32.21549 -30.18702 -28.39503 -27.41788 -24.73760 -22.91664 -20.83794 -20.11396 -18.87166 -16.74673 -15.90984 -14.92552 -14.71839 -14.17017 -13.40214 -13.22376 -12.79020 -12.60866 -12.40303 -12.16046 -11.43965 -11.22967 -11.04930 -10.90978 -10.63324 -10.29846 -10.23692 -10.17396 -9.92263 -9.34133 -8.88035 -8.17176 -6.86542 -6.58918 -6.26516 -3.94091 2.39817 2.83678 3.13031 3.19795 3.23782 4.03778 4.16080 4.50412 5.03542 5.50042 5.84585 5.89018 5.93244 6.07886 6.19744 6.28244 6.46691 6.54434 6.63823 6.80139 6.96074 7.00534 7.05641 7.19817 7.36962 7.42598 7.60528 7.81512 8.01390 8.27900 8.41386 8.73885 8.88847 9.18326 9.20024 10.52538 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.014901 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.400205 B = 1878.574787 C = 2969.262455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 C -0.122 4.122 4 N -0.590 5.590 5 H 0.390 0.610 6 C 0.096 3.904 7 C -0.170 4.170 8 C -0.108 4.108 9 C -0.206 4.206 10 C -0.010 4.010 11 C -0.101 4.101 12 C 0.078 3.922 13 C -0.458 4.458 14 H 0.074 0.926 15 C 0.080 3.920 16 N -0.810 5.810 17 Si 0.896 3.104 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.270 1.270 21 H 0.038 0.962 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -1.343 -3.564 4.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.055 4.055 3 C -0.225 4.225 4 N -0.193 5.193 5 H 0.223 0.777 6 C -0.014 4.014 7 C -0.192 4.192 8 C -0.127 4.127 9 C -0.226 4.226 10 C -0.029 4.029 11 C -0.108 4.108 12 C 0.072 3.928 13 C -0.491 4.491 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.438 5.438 17 Si 0.722 3.278 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.057 0.943 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.319 -1.239 -3.526 3.964 hybrid contribution -0.080 -0.082 0.363 0.380 sum 1.239 -1.321 -3.164 3.646 Atomic orbital electron populations 1.21733 0.96567 0.99384 1.02167 1.19488 0.94596 0.91291 1.00111 1.20151 1.20376 0.96528 0.85432 1.40880 1.60620 1.10492 1.07292 0.77724 1.18232 1.02049 0.86215 0.94939 1.19675 1.09114 0.93092 0.97283 1.20400 1.01783 0.96011 0.94533 1.20625 1.09365 0.98856 0.93775 1.20657 0.92034 0.90638 0.99558 1.19307 1.04186 0.96258 0.91019 1.17778 0.94855 0.88599 0.91594 1.18469 1.43332 0.95227 0.92066 0.90816 1.25655 0.93416 0.94221 1.00191 1.69939 1.29538 1.08122 1.36193 0.86578 0.79557 0.78427 0.83261 1.19225 1.20734 1.19459 0.94336 0.91610 0.94102 0.94310 0.91402 0.88535 0.87974 0.88164 0.86392 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.90 37.16 0.37 -2.21 16 2 C -0.02 -0.32 6.22 -27.89 -0.17 -0.50 16 3 C -0.12 -2.86 6.48 -80.67 -0.52 -3.38 16 4 N -0.59 -12.82 5.99 -6.14 -0.04 -12.86 16 5 H 0.39 7.01 8.96 -40.82 -0.37 6.64 16 6 C 0.10 2.26 7.23 -83.90 -0.61 1.65 16 7 C -0.17 -3.54 10.07 -39.39 -0.40 -3.93 16 8 C -0.11 -2.17 10.01 -39.55 -0.40 -2.56 16 9 C -0.21 -4.45 10.04 -39.55 -0.40 -4.85 16 10 C -0.01 -0.26 8.75 -39.36 -0.34 -0.60 16 11 C -0.10 -2.65 5.79 -104.90 -0.61 -3.25 16 12 C 0.08 2.07 5.72 -104.79 -0.60 1.47 16 13 C -0.46 -12.22 8.96 -38.02 -0.34 -12.56 16 14 H 0.07 1.90 7.63 -52.48 -0.40 1.50 16 15 C 0.08 2.05 4.89 -17.32 -0.08 1.96 16 16 N -0.81 -21.50 10.31 55.54 0.57 -20.92 16 17 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.07 1.33 7.77 -51.93 -0.40 0.93 16 26 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.12 3.01 6.31 -52.49 -0.33 2.68 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -28.45 257.00 -8.32 -36.77 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.59 Total: 7.62 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -4.10 Total: -28.76 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.54 Total: -33.78 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.45 -8.32 -36.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222581043.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.425 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds