Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47784 * 2 1 4 4 N 1.35639 * 125.36005 * 264.98181 * 3 2 1 5 5 H 0.96997 * 124.69404 * 0.02820 * 4 3 2 6 6 C 1.38153 * 110.61818 * 179.97438 * 4 3 2 7 7 C 1.39118 * 132.80479 * 179.97438 * 6 4 3 8 8 C 1.37870 * 119.97205 * 179.97438 * 7 6 4 9 9 C 1.38675 * 120.62155 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.25131 * 359.97438 * 9 8 7 11 11 C 1.39191 * 119.69336 * 0.27992 * 10 9 8 12 12 C 1.38898 * 125.35694 * 84.97269 * 3 2 1 13 13 C 1.40893 * 126.93094 * 0.02720 * 12 3 2 14 14 H 1.08005 * 119.99922 * 31.00483 * 13 12 3 15 15 C 1.39737 * 120.00105 * 211.00822 * 13 12 3 16 16 N 1.31052 * 119.99824 * 19.41403 * 15 13 12 17 17 Si 1.86798 * 119.99857 * 199.41960 * 15 13 12 18 18 H 1.48500 * 109.47251 * 59.99912 * 17 15 13 19 19 H 1.48512 * 109.46909 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47190 * 299.99284 * 17 15 13 21 21 H 1.08996 * 109.47706 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46593 * 300.00247 * 1 2 3 23 23 H 1.08997 * 109.46894 * 59.99574 * 1 2 3 24 24 H 1.09012 * 109.46999 * 239.99958 * 2 1 3 25 25 H 1.09001 * 109.47370 * 120.00397 * 2 1 3 26 26 H 1.07999 * 120.02035 * 359.97438 * 7 6 4 27 27 H 1.08000 * 119.69109 * 180.02562 * 8 7 6 28 28 H 1.08003 * 119.87665 * 180.02562 * 9 8 7 29 29 H 1.07996 * 120.15197 * 179.97438 * 10 9 8 30 30 H 0.97004 * 119.99737 * 174.97682 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3854 2.1285 -1.1019 5 1 2.3499 1.7900 -2.0103 6 6 2.8014 3.3985 -0.7518 7 6 3.2546 4.4834 -1.4954 8 6 3.6082 5.6546 -0.8598 9 6 3.5177 5.7648 0.5196 10 6 3.0708 4.7005 1.2736 11 6 2.7157 3.5107 0.6446 12 6 2.2069 2.2115 1.1284 13 6 1.9536 1.8465 2.4655 14 1 2.0747 0.8195 2.7771 15 6 1.5455 2.8131 3.3884 16 7 1.0353 3.9451 2.9692 17 14 1.7272 2.4917 5.2195 18 1 3.1593 2.2686 5.5432 19 1 1.2251 3.6643 5.9801 20 1 0.9422 1.2871 5.5910 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.3294 4.4083 -2.5702 27 1 3.9591 6.4941 -1.4416 28 1 3.7975 6.6881 1.0051 29 1 3.0013 4.7879 2.3478 30 1 0.6852 4.5854 3.6083 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222581043.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = 21.164078 kcal Electronic energy + Delta-G solvation = -14003.233270 eV Core-core repulsion = 11762.283772 eV Total energy + Delta-G solvation = -2240.949498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.41084 -37.50552 -35.45390 -33.81909 -31.97383 -30.17550 -29.14684 -26.58749 -24.54415 -22.55553 -21.87736 -20.65734 -18.53336 -17.73629 -16.66597 -16.49040 -15.80416 -15.06169 -14.95170 -14.46776 -14.29881 -14.18435 -13.79706 -13.08059 -12.98929 -12.75408 -12.65673 -12.25014 -11.99048 -11.91273 -11.84405 -11.59520 -11.13170 -10.75460 -9.96657 -8.61509 -8.46942 -8.09438 -5.87305 0.65432 1.09697 1.39354 1.43718 1.51615 2.21731 2.36088 2.81925 3.21205 3.62476 4.26154 4.33480 4.41457 4.49254 4.59494 4.72874 4.91222 4.95453 5.02994 5.12483 5.28933 5.33535 5.45569 5.51832 5.54402 5.64621 5.88121 6.03386 6.24304 6.49133 6.50718 6.87137 7.12496 7.26384 7.44084 8.65982 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.014901 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.400205 B = 1878.574787 C = 2969.262455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 C -0.106 4.106 4 N -0.581 5.581 5 H 0.409 0.591 6 C 0.074 3.926 7 C -0.163 4.163 8 C -0.106 4.106 9 C -0.202 4.202 10 C -0.043 4.043 11 C -0.140 4.140 12 C 0.019 3.981 13 C -0.487 4.487 14 H 0.067 0.933 15 C 0.039 3.961 16 N -0.844 5.844 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.263 1.263 21 H 0.073 0.927 22 H 0.031 0.969 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -1.407 -5.275 5.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.057 4.057 3 C -0.210 4.210 4 N -0.185 5.185 5 H 0.246 0.754 6 C -0.036 4.036 7 C -0.184 4.184 8 C -0.125 4.125 9 C -0.222 4.222 10 C -0.062 4.062 11 C -0.147 4.147 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.085 0.915 15 C -0.172 4.172 16 N -0.473 5.473 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.187 1.187 21 H 0.092 0.908 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.731 -1.309 -5.272 5.702 hybrid contribution -0.164 -0.056 0.722 0.743 sum 1.567 -1.365 -4.550 5.002 Atomic orbital electron populations 1.21624 0.95444 1.01250 1.00643 1.19623 0.95426 0.89167 1.01459 1.20752 1.17380 0.97613 0.85283 1.40843 1.59816 1.09936 1.07928 0.75395 1.18583 1.03034 0.87566 0.94416 1.20153 1.07064 0.92083 0.99113 1.20896 1.00412 0.97139 0.94007 1.20983 1.07687 0.98655 0.94858 1.20671 0.94580 0.91958 0.99010 1.19639 1.05504 0.96713 0.92817 1.18233 0.97479 0.90308 0.92712 1.18633 1.44850 0.95314 0.93227 0.91453 1.26333 0.92879 0.93961 1.04065 1.70026 1.30909 1.09046 1.37298 0.85577 0.79255 0.78497 0.78227 1.19325 1.20100 1.18711 0.90769 0.94973 0.93719 0.90912 0.91967 0.84759 0.83490 0.85721 0.88620 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.90 71.98 0.71 -3.94 16 2 C -0.02 -0.70 6.22 29.84 0.19 -0.51 16 3 C -0.11 -4.94 6.48 42.13 0.27 -4.67 16 4 N -0.58 -24.44 5.99 -173.35 -1.04 -25.47 16 5 H 0.41 13.64 8.96 -92.71 -0.83 12.81 16 6 C 0.07 3.41 7.23 38.87 0.28 3.69 16 7 C -0.16 -6.28 10.07 22.39 0.23 -6.06 16 8 C -0.11 -3.89 10.01 22.29 0.22 -3.67 16 9 C -0.20 -8.49 10.04 22.29 0.22 -8.27 16 10 C -0.04 -2.22 8.75 22.41 0.20 -2.02 16 11 C -0.14 -7.52 5.79 -20.04 -0.12 -7.63 16 12 C 0.02 1.03 5.72 -19.98 -0.11 0.91 16 13 C -0.49 -27.18 8.96 23.28 0.21 -26.97 16 14 H 0.07 3.65 7.63 -2.91 -0.02 3.62 16 15 C 0.04 2.06 4.89 85.17 0.42 2.48 16 16 N -0.84 -46.92 10.31 21.80 0.22 -46.69 16 17 Si 0.96 41.19 29.60 68.60 2.03 43.22 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.06 2.42 7.77 -2.39 -0.02 2.40 16 26 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 28 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.10 5.17 6.31 -2.91 -0.02 5.15 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -64.13 257.00 4.25 -59.89 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.31 Total: 25.71 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 2.72 Total: -56.65 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -0.81 Total: -72.17 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -64.13 4.25 -59.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222581043.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.051 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds