Wall clock time and date at job start Mon Mar 30 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 C 1.50695 * 109.47394 * 239.99835 * 2 1 3 5 5 H 1.08007 * 120.00071 * 245.68276 * 4 2 1 6 6 C 1.37878 * 120.00138 * 65.67777 * 4 2 1 7 7 N 1.31512 * 120.00187 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99948 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46881 * 60.00073 * 8 6 4 10 10 H 1.48504 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46989 * 300.00012 * 8 6 4 12 12 N 1.46897 * 109.47071 * 119.99572 * 2 1 3 13 13 C 1.46462 * 110.99945 * 59.76888 * 12 2 1 14 14 C 1.53248 * 109.85990 * 197.76589 * 13 12 2 15 15 S 1.81899 * 108.50586 * 297.99728 * 14 13 12 16 16 C 1.81897 * 101.91440 * 51.30853 * 15 14 13 17 17 C 1.46470 * 111.00181 * 185.75320 * 12 2 1 18 18 H 1.09002 * 109.40454 * 282.27551 * 17 12 2 19 19 C 1.52999 * 109.40477 * 42.11146 * 17 12 2 20 20 H 1.08996 * 109.46845 * 174.25080 * 1 2 3 21 21 H 1.08999 * 109.47131 * 294.25136 * 1 2 3 22 22 H 1.09003 * 109.46969 * 54.25418 * 1 2 3 23 23 H 0.97001 * 119.99988 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.40839 * 317.88380 * 13 12 2 25 25 H 1.08996 * 109.40778 * 77.64976 * 13 12 2 26 26 H 1.08998 * 109.63256 * 178.29541 * 14 13 12 27 27 H 1.08999 * 109.79767 * 57.79924 * 14 13 12 28 28 H 1.09000 * 109.63123 * 188.99508 * 16 15 14 29 29 H 1.08998 * 109.79703 * 68.49438 * 16 15 14 30 30 H 1.09005 * 109.47325 * 54.39436 * 19 17 12 31 31 H 1.09002 * 109.47055 * 174.39045 * 19 17 12 32 32 H 1.08997 * 109.47688 * 294.39209 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5756 -1.6390 -1.1339 6 6 1.7986 -0.1751 -2.4793 7 7 1.1376 0.9557 -2.5968 8 14 2.4208 -1.0562 -4.0045 9 1 1.8153 -2.4103 -4.0755 10 1 2.0417 -0.2810 -5.2132 11 1 3.8992 -1.1778 -3.9374 12 7 2.0197 -0.6924 1.1995 13 6 1.5456 -2.0777 1.2362 14 6 1.6794 -2.6363 2.6569 15 16 3.4393 -2.6286 3.1169 16 6 3.9196 -0.9162 2.7355 17 6 3.4774 -0.5944 1.3039 18 1 3.9382 -1.3031 0.6157 19 6 3.9186 0.8253 0.9424 20 1 -0.3633 -1.0225 -0.1029 21 1 -0.3633 0.4221 0.9370 22 1 -0.3633 0.6004 -0.8341 23 1 0.9728 1.3321 -3.4755 24 1 0.4996 -2.1107 0.9311 25 1 2.1405 -2.6823 0.5518 26 1 1.2977 -3.6568 2.6866 27 1 1.1164 -2.0143 3.3527 28 1 5.0017 -0.8127 2.8164 29 1 3.4333 -0.2326 3.4314 30 1 3.3802 1.5421 1.5626 31 1 4.9899 0.9279 1.1153 32 1 3.7000 1.0175 -0.1080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226394327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:32 Heat of formation + Delta-G solvation = 0.203568 kcal Electronic energy + Delta-G solvation = -13487.340635 eV Core-core repulsion = 11380.926173 eV Total energy + Delta-G solvation = -2106.414462 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.15007 -33.34203 -32.21269 -30.52240 -27.12066 -26.66931 -25.09775 -22.26812 -20.85773 -18.94502 -16.44948 -15.85991 -15.32810 -14.84132 -14.10094 -13.76715 -13.52035 -13.08063 -12.57159 -12.03788 -11.69540 -11.59242 -11.39934 -11.31557 -10.97845 -10.76177 -10.69771 -10.32547 -10.20921 -10.02840 -9.75637 -9.20604 -9.06660 -8.43486 -7.39572 -7.18732 -6.05345 -4.16487 2.24035 2.93626 3.25744 3.31031 3.34237 4.36669 4.75860 5.21992 5.38414 5.48611 5.60236 5.77358 5.79134 5.86726 6.11774 6.22108 6.32427 6.38824 6.62661 6.82542 6.85745 6.94516 6.99201 7.12690 7.50537 7.63321 7.87611 8.06453 8.25115 8.36462 8.92679 9.51525 10.96819 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037062 B = 0.010185 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.319273 B = 2748.378327 C = 2771.326152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.206 3.794 3 H 0.055 0.945 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.070 3.930 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.545 5.545 13 C 0.061 3.939 14 C -0.067 4.067 15 S -0.306 6.306 16 C -0.062 4.062 17 C 0.095 3.905 18 H 0.051 0.949 19 C -0.142 4.142 20 H 0.029 0.971 21 H 0.017 0.983 22 H 0.073 0.927 23 H 0.262 0.738 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -2.716 7.374 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 H 0.073 0.927 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.132 4.132 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.271 5.271 13 C -0.069 4.069 14 C -0.216 4.216 15 S -0.079 6.079 16 C -0.211 4.211 17 C -0.015 4.015 18 H 0.069 0.931 19 C -0.201 4.201 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.608 -3.201 8.073 9.067 hybrid contribution -0.075 -0.002 -2.084 2.086 sum 2.532 -3.203 5.988 7.248 Atomic orbital electron populations 1.21816 0.98173 0.99515 0.99197 1.19398 0.91775 0.94978 0.83811 0.92706 1.21644 1.36216 1.08497 0.91831 0.92798 1.24890 0.94806 0.94747 0.98797 1.69897 1.40107 1.18596 1.23856 0.86763 0.79379 0.79845 0.82683 1.20337 1.21263 1.20301 1.61747 1.08668 1.13453 1.43203 1.22044 1.01979 0.90518 0.92343 1.23569 0.92878 1.03880 1.01269 1.86492 1.14904 1.19753 1.86791 1.23628 1.03037 0.93464 1.00957 1.21428 0.89882 0.97906 0.92294 0.93081 1.21915 0.98888 0.95313 1.03941 0.95229 0.96418 0.90823 0.92808 0.89639 0.93729 0.88738 0.89833 0.88727 0.89814 0.92811 0.93789 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.61 37.16 0.32 -2.65 16 2 C 0.21 4.86 1.73 -68.87 -0.12 4.74 16 3 H 0.06 1.41 5.93 -51.93 -0.31 1.10 16 4 C -0.54 -13.99 6.77 -34.44 -0.23 -14.22 16 5 H 0.05 1.43 6.22 -52.48 -0.33 1.10 16 6 C 0.07 1.87 5.33 -17.82 -0.10 1.77 16 7 N -0.89 -24.28 11.81 55.43 0.65 -23.63 16 8 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.55 -11.15 4.29 -220.49 -0.95 -12.10 16 13 C 0.06 1.17 4.61 -3.93 -0.02 1.15 16 14 C -0.07 -1.08 6.69 37.29 0.25 -0.84 16 15 S -0.31 -5.11 22.40 -107.50 -2.41 -7.51 16 16 C -0.06 -1.01 5.97 37.29 0.22 -0.79 16 17 C 0.10 1.81 1.96 -67.82 -0.13 1.68 16 18 H 0.05 1.09 7.33 -51.93 -0.38 0.70 16 19 C -0.14 -2.59 8.03 37.16 0.30 -2.29 16 20 H 0.03 0.66 6.35 -51.93 -0.33 0.33 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.07 1.86 6.67 -51.93 -0.35 1.51 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.09 1.66 5.66 -51.93 -0.29 1.37 16 25 H 0.04 0.93 6.83 -51.93 -0.35 0.58 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.80 6.19 -51.93 -0.32 1.48 16 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -26.35 255.50 -8.13 -34.48 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.75 Total: 0.57 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 0.49 Total: -11.45 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.29 Total: -35.73 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.41 Total: -7.51 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.35 -8.13 -34.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226394327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -26.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds