Wall clock time and date at job start Mon Mar 30 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 C 1.50695 * 109.47394 * 239.99835 * 2 1 3 5 5 H 1.08007 * 120.00071 * 245.68276 * 4 2 1 6 6 C 1.37878 * 120.00138 * 65.67777 * 4 2 1 7 7 N 1.31512 * 120.00187 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99948 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46881 * 60.00073 * 8 6 4 10 10 H 1.48504 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46989 * 300.00012 * 8 6 4 12 12 N 1.46897 * 109.47071 * 119.99572 * 2 1 3 13 13 C 1.46462 * 110.99945 * 59.76888 * 12 2 1 14 14 C 1.53248 * 109.85990 * 197.76589 * 13 12 2 15 15 S 1.81899 * 108.50586 * 297.99728 * 14 13 12 16 16 C 1.81897 * 101.91440 * 51.30853 * 15 14 13 17 17 C 1.46470 * 111.00181 * 185.75320 * 12 2 1 18 18 H 1.09002 * 109.40454 * 282.27551 * 17 12 2 19 19 C 1.52999 * 109.40477 * 42.11146 * 17 12 2 20 20 H 1.08996 * 109.46845 * 174.25080 * 1 2 3 21 21 H 1.08999 * 109.47131 * 294.25136 * 1 2 3 22 22 H 1.09003 * 109.46969 * 54.25418 * 1 2 3 23 23 H 0.97001 * 119.99988 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.40839 * 317.88380 * 13 12 2 25 25 H 1.08996 * 109.40778 * 77.64976 * 13 12 2 26 26 H 1.08998 * 109.63256 * 178.29541 * 14 13 12 27 27 H 1.08999 * 109.79767 * 57.79924 * 14 13 12 28 28 H 1.09000 * 109.63123 * 188.99508 * 16 15 14 29 29 H 1.08998 * 109.79703 * 68.49438 * 16 15 14 30 30 H 1.09005 * 109.47325 * 54.39436 * 19 17 12 31 31 H 1.09002 * 109.47055 * 174.39045 * 19 17 12 32 32 H 1.08997 * 109.47688 * 294.39209 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5756 -1.6390 -1.1339 6 6 1.7986 -0.1751 -2.4793 7 7 1.1376 0.9557 -2.5968 8 14 2.4208 -1.0562 -4.0045 9 1 1.8153 -2.4103 -4.0755 10 1 2.0417 -0.2810 -5.2132 11 1 3.8992 -1.1778 -3.9374 12 7 2.0197 -0.6924 1.1995 13 6 1.5456 -2.0777 1.2362 14 6 1.6794 -2.6363 2.6569 15 16 3.4393 -2.6286 3.1169 16 6 3.9196 -0.9162 2.7355 17 6 3.4774 -0.5944 1.3039 18 1 3.9382 -1.3031 0.6157 19 6 3.9186 0.8253 0.9424 20 1 -0.3633 -1.0225 -0.1029 21 1 -0.3633 0.4221 0.9370 22 1 -0.3633 0.6004 -0.8341 23 1 0.9728 1.3321 -3.4755 24 1 0.4996 -2.1107 0.9311 25 1 2.1405 -2.6823 0.5518 26 1 1.2977 -3.6568 2.6866 27 1 1.1164 -2.0143 3.3527 28 1 5.0017 -0.8127 2.8164 29 1 3.4333 -0.2326 3.4314 30 1 3.3802 1.5421 1.5626 31 1 4.9899 0.9279 1.1153 32 1 3.7000 1.0175 -0.1080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226394327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:32 Heat of formation + Delta-G solvation = -15.183440 kcal Electronic energy + Delta-G solvation = -13488.007866 eV Core-core repulsion = 11380.926173 eV Total energy + Delta-G solvation = -2107.081693 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80074 -35.21882 -33.75189 -32.28614 -28.75725 -28.10787 -27.11282 -23.80610 -22.52363 -20.69134 -18.19658 -17.49964 -16.99900 -16.54085 -15.80287 -15.26081 -14.99078 -14.84062 -14.09621 -13.60446 -13.28741 -13.15953 -13.13159 -12.96616 -12.74534 -12.55269 -12.29214 -12.18885 -11.86074 -11.82166 -11.48480 -11.03525 -10.52752 -10.45190 -9.05417 -8.61324 -8.06315 -6.24707 0.93493 1.36921 1.38941 1.45052 1.61912 2.39904 3.16897 3.19664 3.95400 4.06223 4.30436 4.32705 4.40310 4.46021 4.66001 4.77016 4.81583 4.92659 5.02391 5.07650 5.10485 5.20962 5.32215 5.45296 5.54871 5.70426 5.94461 6.18485 6.34450 6.62303 6.93621 7.45810 8.92069 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037062 B = 0.010185 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.319273 B = 2748.378327 C = 2771.326152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.543 4.543 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.911 5.911 8 Si 0.938 3.062 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.542 5.542 13 C 0.063 3.937 14 C -0.058 4.058 15 S -0.311 6.311 16 C -0.053 4.053 17 C 0.094 3.906 18 H 0.025 0.975 19 C -0.133 4.133 20 H 0.032 0.968 21 H 0.033 0.967 22 H 0.048 0.952 23 H 0.262 0.738 24 H 0.081 0.919 25 H 0.022 0.978 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -3.367 8.509 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.583 4.583 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.267 5.267 13 C -0.066 4.066 14 C -0.207 4.207 15 S -0.084 6.084 16 C -0.202 4.202 17 C -0.016 4.016 18 H 0.043 0.957 19 C -0.192 4.192 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.136 0.864 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.095 -3.864 9.219 10.464 hybrid contribution -0.204 0.191 -2.412 2.428 sum 2.891 -3.673 6.807 8.257 Atomic orbital electron populations 1.21654 0.97783 0.99253 0.98964 1.19181 0.91999 0.93964 0.84435 0.94949 1.21800 1.35612 1.07948 0.92909 0.93939 1.25499 0.95217 0.95402 1.01180 1.69996 1.41132 1.19619 1.24219 0.85926 0.78776 0.78846 0.79971 1.20180 1.20937 1.20197 1.61752 1.09730 1.14098 1.41143 1.22032 1.01100 0.89388 0.94127 1.23520 0.92911 1.05257 0.98989 1.86557 1.15258 1.20068 1.86488 1.23564 1.04534 0.93420 0.98676 1.21468 0.88685 0.97593 0.93846 0.95692 1.21802 1.00880 0.95049 1.01483 0.94949 0.94756 0.93317 0.92921 0.90132 0.95972 0.86450 0.88805 0.86506 0.88837 0.92310 0.90875 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.61 71.98 0.62 -4.84 16 2 C 0.21 10.02 1.73 44.17 0.08 10.09 16 3 H 0.03 1.70 5.93 -2.39 -0.01 1.69 16 4 C -0.54 -28.36 6.77 25.60 0.17 -28.18 16 5 H 0.04 2.28 6.22 -2.91 -0.02 2.26 16 6 C 0.03 1.46 5.33 84.66 0.45 1.91 16 7 N -0.91 -50.60 11.81 21.45 0.25 -50.34 16 8 Si 0.94 42.94 29.54 68.60 2.03 44.97 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.54 -21.77 4.29 -851.51 -3.66 -25.43 16 13 C 0.06 2.35 4.61 86.47 0.40 2.75 16 14 C -0.06 -1.74 6.69 72.07 0.48 -1.25 16 15 S -0.31 -9.57 22.40 -56.49 -1.27 -10.84 16 16 C -0.05 -1.60 5.97 72.07 0.43 -1.17 16 17 C 0.09 3.49 1.96 45.08 0.09 3.58 16 18 H 0.03 1.06 7.33 -2.39 -0.02 1.04 16 19 C -0.13 -4.76 8.03 71.98 0.58 -4.19 16 20 H 0.03 1.43 6.35 -2.39 -0.02 1.41 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 2.48 6.67 -2.39 -0.02 2.46 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.08 3.06 5.66 -2.39 -0.01 3.04 16 25 H 0.02 0.92 6.83 -2.39 -0.02 0.90 16 26 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.02 8.11 -2.38 -0.02 2.00 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 2.00 6.19 -2.39 -0.01 1.98 16 Total: -1.00 -55.62 255.50 1.74 -53.87 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.09 Total: 9.06 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.30 Total: -21.29 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.40 Total: -75.77 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -1.27 Total: -10.84 kcal Total: -55.62 1.74 -53.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226394327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.688 kcal (2) G-P(sol) polarization free energy of solvation -55.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds