Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00045 * 2 1 4 4 H 1.07995 * 120.00091 * 201.59739 * 3 2 1 5 5 C 1.38810 * 119.99822 * 21.59033 * 3 2 1 6 6 N 1.31615 * 120.00139 * 15.49270 * 5 3 2 7 7 Si 1.86803 * 120.00094 * 195.49306 * 5 3 2 8 8 H 1.48501 * 109.46988 * 59.99657 * 7 5 3 9 9 H 1.48495 * 109.47497 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46663 * 300.00125 * 7 5 3 11 11 C 1.46504 * 120.00126 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.54304 * 182.61769 * 11 2 1 13 13 C 1.54157 * 110.48630 * 305.27932 * 11 2 1 14 14 O 1.43744 * 107.30141 * 120.72854 * 13 11 2 15 15 C 1.44379 * 106.97406 * 333.45513 * 14 13 11 16 16 C 1.54810 * 110.48248 * 60.00685 * 11 2 1 17 17 H 1.09001 * 110.90853 * 143.97120 * 16 11 2 18 18 C 1.50703 * 110.91208 * 20.39970 * 16 11 2 19 19 O 1.20822 * 119.99603 * 2.92639 * 18 16 11 20 20 O 1.34228 * 120.00053 * 182.92660 * 18 16 11 21 21 H 1.08998 * 109.47663 * 269.40933 * 1 2 3 22 22 H 1.08998 * 109.47020 * 29.40945 * 1 2 3 23 23 H 1.09001 * 109.47370 * 149.40687 * 1 2 3 24 24 H 0.97003 * 120.00413 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.89935 * 1.28880 * 13 11 2 26 26 H 1.08998 * 109.97649 * 240.21079 * 13 11 2 27 27 H 1.09001 * 110.62213 * 281.56048 * 15 14 13 28 28 H 1.08996 * 110.75386 * 158.62497 * 15 14 13 29 29 H 0.96702 * 116.99630 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1727 1.2187 -0.3443 5 6 1.5286 2.3458 0.4424 6 7 0.4133 2.2713 1.1372 7 14 2.2757 4.0127 0.0514 8 1 2.3541 4.1869 -1.4213 9 1 1.4275 5.0841 0.6326 10 1 3.6401 4.0921 0.6325 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0901 0.0471 13 6 1.7450 -2.1525 1.1798 14 8 1.2367 -3.3775 0.6256 15 6 0.7671 -3.0749 -0.7058 16 6 1.8405 -2.1009 -1.2551 17 1 2.7105 -2.6467 -1.6203 18 6 1.2666 -1.2228 -2.3371 19 8 1.1916 -0.0287 -2.1695 20 8 0.8388 -1.7674 -3.4869 21 1 -0.3634 -0.0106 1.0276 22 1 -0.3633 0.8952 -0.5046 23 1 -0.3634 -0.8846 -0.5230 24 1 -0.0205 3.0818 1.4467 25 1 0.9604 -1.6468 1.7428 26 1 2.5917 -2.3643 1.8327 27 1 -0.2081 -2.5895 -0.6678 28 1 0.7215 -3.9783 -1.3138 29 1 0.4789 -1.1639 -4.1513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250386542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = -77.150040 kcal Electronic energy + Delta-G solvation = -15668.916902 eV Core-core repulsion = 12980.562170 eV Total energy + Delta-G solvation = -2688.354732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19319 -38.28885 -35.72949 -34.54141 -31.83285 -30.12224 -28.12834 -25.96774 -23.66187 -23.03804 -21.08414 -19.13155 -17.62934 -16.74739 -16.28388 -15.90280 -15.11099 -14.64206 -14.34265 -13.96136 -13.49238 -12.79122 -12.53154 -12.20724 -11.71565 -11.69232 -11.06082 -10.97596 -10.70686 -10.63189 -10.33637 -10.15224 -9.93204 -9.79668 -9.42488 -9.16786 -8.38034 -6.62193 -5.65826 -3.04942 2.97658 3.44119 3.49575 3.51779 3.55407 4.42802 4.56398 4.97978 5.22783 5.34184 5.51948 5.66574 5.79301 5.90357 5.91664 6.08071 6.18576 6.51915 6.65769 6.77517 7.11863 7.23304 7.43698 7.73122 7.88241 8.45694 8.66865 9.28800 9.91684 10.39801 11.41590 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.012290 C = 0.010428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.492693 B = 2277.657143 C = 2684.396379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.562 5.562 3 C -0.228 4.228 4 H 0.062 0.938 5 C 0.000 4.000 6 N -0.911 5.911 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.159 3.841 12 H 0.086 0.914 13 C 0.026 3.974 14 O -0.383 6.383 15 C 0.064 3.936 16 C -0.142 4.142 17 H 0.108 0.892 18 C 0.460 3.540 19 O -0.430 6.430 20 O -0.539 6.539 21 H 0.018 0.982 22 H 0.056 0.944 23 H -0.012 1.012 24 H 0.251 0.749 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -8.887 -5.388 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.281 5.281 3 C -0.358 4.358 4 H 0.080 0.920 5 C -0.197 4.197 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.211 1.211 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.053 4.053 14 O -0.302 6.302 15 C -0.013 4.013 16 C -0.165 4.165 17 H 0.126 0.874 18 C 0.297 3.703 19 O -0.310 6.310 20 O -0.353 6.353 21 H 0.036 0.964 22 H 0.074 0.926 23 H 0.006 0.994 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.089 -8.780 -4.821 10.076 hybrid contribution 0.092 1.557 -0.818 1.761 sum 1.180 -7.223 -5.639 9.239 Atomic orbital electron populations 1.20795 0.82616 0.96406 0.97489 1.43688 1.01596 0.99483 1.83304 1.18947 0.96984 0.85074 1.34766 0.91978 1.24849 0.98061 0.98147 0.98612 1.70061 1.20253 1.26922 1.38444 0.86352 0.78127 0.84087 0.78037 1.21333 1.21817 1.21144 1.21558 0.97599 0.87132 0.88986 0.89564 1.24053 0.99194 0.84461 0.97585 1.88788 1.81147 1.31876 1.28380 1.23426 0.96067 0.97824 0.84007 1.23098 1.00136 0.97876 0.95347 0.87410 1.22954 0.76986 0.88663 0.81682 1.91052 1.47614 1.15382 1.76977 1.84538 1.75771 1.46792 1.28157 0.96353 0.92558 0.99400 0.93879 0.91054 0.90178 0.91683 0.89038 0.74402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.30 6.06 59.84 0.36 4.66 15 2 N -0.56 -13.98 1.44 -171.71 -0.25 -14.23 15 3 C -0.23 -6.33 8.37 -15.06 -0.13 -6.46 15 4 H 0.06 1.70 7.86 -52.49 -0.41 1.29 15 5 C 0.00 0.01 5.01 -17.43 -0.09 -0.07 15 6 N -0.91 -27.05 10.81 55.49 0.60 -26.45 15 7 Si 0.90 22.61 29.58 -169.99 -5.03 17.58 15 8 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 11 C 0.16 3.22 3.43 -66.37 -0.23 2.99 15 12 H 0.09 1.69 7.93 -51.93 -0.41 1.28 15 13 C 0.03 0.48 7.20 37.76 0.27 0.75 15 14 O -0.38 -6.81 11.52 -35.23 -0.41 -7.22 15 15 C 0.06 1.02 6.83 38.22 0.26 1.29 15 16 C -0.14 -2.43 3.45 -89.76 -0.31 -2.74 15 17 H 0.11 1.58 8.14 -51.93 -0.42 1.15 15 18 C 0.46 8.49 6.47 36.01 0.23 8.72 15 19 O -0.43 -9.93 12.04 -18.75 -0.23 -10.16 15 20 O -0.54 -7.85 13.42 -39.25 -0.53 -8.38 15 21 H 0.02 0.49 7.35 -51.93 -0.38 0.11 15 22 H 0.06 1.59 6.77 -51.93 -0.35 1.24 15 23 H -0.01 -0.27 4.22 -51.93 -0.22 -0.49 15 24 H 0.25 7.28 8.31 -40.82 -0.34 6.94 15 25 H 0.07 1.50 6.97 -51.93 -0.36 1.14 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 27 H 0.07 1.12 5.93 -51.93 -0.31 0.81 15 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 29 H 0.40 4.30 9.10 45.56 0.41 4.72 15 LS Contribution 235.82 15.07 3.55 3.55 Total: -1.00 -32.26 235.82 -4.34 -36.60 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -2.43 Total: -0.43 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 0.38 Total: 9.13 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.35 Total: -40.68 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.16 Total: -25.75 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.26 -4.34 -36.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250386542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.553 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds