Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00045 * 2 1 4 4 H 1.07995 * 120.00091 * 201.59739 * 3 2 1 5 5 C 1.38810 * 119.99822 * 21.59033 * 3 2 1 6 6 N 1.31615 * 120.00139 * 15.49270 * 5 3 2 7 7 Si 1.86803 * 120.00094 * 195.49306 * 5 3 2 8 8 H 1.48501 * 109.46988 * 59.99657 * 7 5 3 9 9 H 1.48495 * 109.47497 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46663 * 300.00125 * 7 5 3 11 11 C 1.46504 * 120.00126 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.54304 * 182.61769 * 11 2 1 13 13 C 1.54157 * 110.48630 * 305.27932 * 11 2 1 14 14 O 1.43744 * 107.30141 * 120.72854 * 13 11 2 15 15 C 1.44379 * 106.97406 * 333.45513 * 14 13 11 16 16 C 1.54810 * 110.48248 * 60.00685 * 11 2 1 17 17 H 1.09001 * 110.90853 * 143.97120 * 16 11 2 18 18 C 1.50703 * 110.91208 * 20.39970 * 16 11 2 19 19 O 1.20822 * 119.99603 * 2.92639 * 18 16 11 20 20 O 1.34228 * 120.00053 * 182.92660 * 18 16 11 21 21 H 1.08998 * 109.47663 * 269.40933 * 1 2 3 22 22 H 1.08998 * 109.47020 * 29.40945 * 1 2 3 23 23 H 1.09001 * 109.47370 * 149.40687 * 1 2 3 24 24 H 0.97003 * 120.00413 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.89935 * 1.28880 * 13 11 2 26 26 H 1.08998 * 109.97649 * 240.21079 * 13 11 2 27 27 H 1.09001 * 110.62213 * 281.56048 * 15 14 13 28 28 H 1.08996 * 110.75386 * 158.62497 * 15 14 13 29 29 H 0.96702 * 116.99630 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1727 1.2187 -0.3443 5 6 1.5286 2.3458 0.4424 6 7 0.4133 2.2713 1.1372 7 14 2.2757 4.0127 0.0514 8 1 2.3541 4.1869 -1.4213 9 1 1.4275 5.0841 0.6326 10 1 3.6401 4.0921 0.6325 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0901 0.0471 13 6 1.7450 -2.1525 1.1798 14 8 1.2367 -3.3775 0.6256 15 6 0.7671 -3.0749 -0.7058 16 6 1.8405 -2.1009 -1.2551 17 1 2.7105 -2.6467 -1.6203 18 6 1.2666 -1.2228 -2.3371 19 8 1.1916 -0.0287 -2.1695 20 8 0.8388 -1.7674 -3.4869 21 1 -0.3634 -0.0106 1.0276 22 1 -0.3633 0.8952 -0.5046 23 1 -0.3634 -0.8846 -0.5230 24 1 -0.0205 3.0818 1.4467 25 1 0.9604 -1.6468 1.7428 26 1 2.5917 -2.3643 1.8327 27 1 -0.2081 -2.5895 -0.6678 28 1 0.7215 -3.9783 -1.3138 29 1 0.4789 -1.1639 -4.1513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250386542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = -101.144222 kcal Electronic energy + Delta-G solvation = -15669.957368 eV Core-core repulsion = 12980.562170 eV Total energy + Delta-G solvation = -2689.395198 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68206 -39.72399 -37.28043 -36.26293 -33.63054 -31.80299 -29.76673 -28.02102 -25.11973 -24.83646 -22.61533 -20.73217 -19.21324 -18.51929 -17.86233 -17.36849 -16.58120 -16.45981 -15.93717 -15.54352 -15.23362 -14.63243 -14.20022 -13.80027 -13.33623 -13.20201 -12.87120 -12.63152 -12.59400 -12.40877 -12.07738 -11.90683 -11.84641 -11.69471 -10.99852 -10.65754 -10.46412 -8.62931 -7.78205 -5.17798 1.43847 1.47984 1.53605 1.53845 2.22706 2.54080 3.06535 3.32288 3.61402 3.63439 3.94538 4.18884 4.22415 4.33730 4.58085 4.70142 4.85753 4.91877 5.04138 5.11792 5.35312 5.57744 5.69837 5.82304 5.90908 6.37648 7.18998 7.32976 7.90093 8.34249 9.27475 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.012290 C = 0.010428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.492693 B = 2277.657143 C = 2684.396379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.198 3.802 2 N -0.574 5.574 3 C -0.224 4.224 4 H 0.063 0.937 5 C -0.059 4.059 6 N -0.944 5.944 7 Si 0.962 3.038 8 H -0.290 1.290 9 H -0.297 1.297 10 H -0.273 1.273 11 C 0.146 3.854 12 H 0.093 0.907 13 C 0.036 3.964 14 O -0.382 6.382 15 C 0.066 3.934 16 C -0.136 4.136 17 H 0.145 0.855 18 C 0.468 3.532 19 O -0.486 6.486 20 O -0.521 6.521 21 H -0.010 1.010 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.244 0.756 25 H 0.041 0.959 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.132 0.868 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -10.647 -6.497 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.294 5.294 3 C -0.354 4.354 4 H 0.080 0.920 5 C -0.252 4.252 6 N -0.592 5.592 7 Si 0.791 3.209 8 H -0.217 1.217 9 H -0.223 1.223 10 H -0.199 1.199 11 C 0.036 3.964 12 H 0.111 0.889 13 C -0.042 4.042 14 O -0.300 6.300 15 C -0.010 4.010 16 C -0.158 4.158 17 H 0.162 0.838 18 C 0.307 3.693 19 O -0.370 6.370 20 O -0.336 6.336 21 H 0.008 0.992 22 H 0.036 0.964 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.121 0.879 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.178 -10.605 -5.966 12.361 hybrid contribution -0.226 1.955 -0.590 2.054 sum 1.952 -8.650 -6.556 11.028 Atomic orbital electron populations 1.20354 0.83307 0.95638 0.95421 1.43726 1.01385 1.00522 1.83719 1.19223 0.96963 0.86396 1.32825 0.91950 1.25551 0.98974 1.01233 0.99488 1.70216 1.21781 1.26954 1.40244 0.85412 0.77774 0.80378 0.77294 1.21707 1.22316 1.19855 1.21855 0.97562 0.85858 0.91095 0.88927 1.23801 0.98977 0.84488 0.96953 1.88807 1.81067 1.30912 1.29242 1.23558 0.94737 0.99171 0.83569 1.23077 1.01850 0.97206 0.93627 0.83758 1.23146 0.75791 0.87926 0.82407 1.91059 1.50037 1.17660 1.78290 1.84470 1.75027 1.46669 1.27425 0.99195 0.96427 0.96750 0.94698 0.94035 0.87883 0.93160 0.85059 0.72182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.16 6.06 127.77 0.77 10.93 15 2 N -0.57 -28.58 1.44 -697.16 -1.01 -29.59 15 3 C -0.22 -12.49 8.37 84.03 0.70 -11.79 15 4 H 0.06 3.41 7.86 -2.91 -0.02 3.38 15 5 C -0.06 -3.43 5.01 84.86 0.42 -3.00 15 6 N -0.94 -57.86 10.81 21.65 0.23 -57.63 15 7 Si 0.96 47.27 29.58 68.60 2.03 49.30 15 8 H -0.29 -14.25 7.11 99.48 0.71 -13.55 15 9 H -0.30 -14.66 7.11 99.48 0.71 -13.95 15 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 11 C 0.15 5.64 3.43 46.00 0.16 5.80 15 12 H 0.09 3.43 7.93 -2.39 -0.02 3.41 15 13 C 0.04 1.30 7.20 72.37 0.52 1.82 15 14 O -0.38 -12.37 11.52 -148.98 -1.72 -14.08 15 15 C 0.07 1.88 6.83 72.67 0.50 2.38 15 16 C -0.14 -4.19 3.45 -10.24 -0.04 -4.23 15 17 H 0.14 3.48 8.14 -2.39 -0.02 3.46 15 18 C 0.47 16.11 6.47 71.24 0.46 16.57 15 19 O -0.49 -22.10 12.04 21.98 0.26 -21.84 15 20 O -0.52 -13.37 13.42 -51.40 -0.69 -14.06 15 21 H -0.01 -0.57 7.35 -2.39 -0.02 -0.59 15 22 H 0.02 1.00 6.77 -2.39 -0.02 0.99 15 23 H 0.01 0.64 4.22 -2.39 -0.01 0.63 15 24 H 0.24 14.67 8.31 -92.71 -0.77 13.89 15 25 H 0.04 1.74 6.97 -2.38 -0.02 1.73 15 26 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 27 H 0.05 1.60 5.93 -2.39 -0.01 1.58 15 28 H 0.13 2.78 8.14 -2.39 -0.02 2.76 15 29 H 0.42 7.74 9.10 -74.06 -0.67 7.06 15 Total: -1.00 -70.53 235.82 3.12 -67.41 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 0.50 Total: 1.99 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 3.50 Total: 18.49 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -0.77 Total: -87.22 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -2.14 Total: -49.98 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -70.53 3.12 -67.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250386542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.730 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds