Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50709 * 109.47015 * 240.00315 * 2 1 3 5 5 H 1.07996 * 119.99737 * 239.99792 * 4 2 1 6 6 C 1.37872 * 119.99842 * 59.99984 * 4 2 1 7 7 N 1.31518 * 119.99985 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47237 * 89.99980 * 8 6 4 10 10 H 1.48503 * 109.47504 * 210.00047 * 8 6 4 11 11 H 1.48498 * 109.47062 * 330.00144 * 8 6 4 12 12 N 1.46902 * 109.47101 * 120.00606 * 2 1 3 13 13 C 1.46864 * 110.91715 * 66.06895 * 12 2 1 14 14 C 1.53249 * 109.64534 * 162.34468 * 13 12 2 15 15 S 1.81897 * 108.66568 * 61.88673 * 14 13 12 16 16 C 1.81893 * 101.91561 * 308.59595 * 15 14 13 17 17 C 1.46471 * 110.99844 * 299.99564 * 12 2 1 18 18 H 1.08999 * 109.39980 * 77.65021 * 17 12 2 19 19 C 1.52995 * 109.40721 * 317.88918 * 17 12 2 20 20 H 1.09002 * 109.46709 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46816 * 299.99812 * 1 2 3 22 22 H 1.09000 * 109.47166 * 59.99753 * 1 2 3 23 23 H 0.97000 * 119.99909 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.69043 * 42.18511 * 13 12 2 25 25 H 1.09003 * 109.34221 * 282.29473 * 13 12 2 26 26 H 1.09002 * 109.63269 * 302.08308 * 14 13 12 27 27 H 1.08995 * 109.63165 * 181.69050 * 14 13 12 28 28 H 1.09008 * 109.63104 * 171.01209 * 16 15 14 29 29 H 1.09000 * 109.63107 * 291.40264 * 16 15 14 30 30 H 1.09004 * 109.47031 * 299.60445 * 19 17 12 31 31 H 1.08996 * 109.47171 * 59.60143 * 19 17 12 32 32 H 1.09004 * 109.47194 * 179.60159 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 1.6698 -2.1185 1.1610 14 6 2.5403 -2.8896 2.1591 15 16 2.1994 -2.2648 3.8330 16 6 2.4013 -0.4706 3.6126 17 6 1.5501 -0.0285 2.4175 18 1 0.5084 -0.2948 2.5965 19 6 1.6633 1.4876 2.2458 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7087 1.1615 -3.4843 24 1 1.8356 -2.5104 0.1575 25 1 0.6197 -2.2398 1.4270 26 1 3.5930 -2.7393 1.9194 27 1 2.3014 -3.9519 2.1090 28 1 2.0683 0.0485 4.5114 29 1 3.4500 -0.2406 3.4242 30 1 2.7049 1.7566 2.0701 31 1 1.0582 1.8032 1.3959 32 1 1.3075 1.9831 3.1492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251756208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = 3.831735 kcal Electronic energy + Delta-G solvation = -13434.790944 eV Core-core repulsion = 11328.533811 eV Total energy + Delta-G solvation = -2106.257133 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.31522 -33.42601 -32.18483 -30.56707 -27.05806 -26.63383 -25.23712 -22.24174 -21.39359 -18.60972 -16.34767 -16.12778 -15.41874 -14.79435 -14.17394 -13.96795 -13.36328 -13.01216 -12.44694 -12.23722 -11.89928 -11.71672 -11.53841 -11.20016 -10.95566 -10.87412 -10.68101 -10.53581 -10.29344 -10.12298 -9.86575 -9.15855 -8.85711 -8.42608 -7.41690 -7.19501 -6.07248 -4.11370 2.20724 2.90065 3.26514 3.33833 3.37047 4.34989 4.70963 5.22359 5.27958 5.45183 5.58245 5.63857 5.72936 5.85989 5.92055 6.07628 6.23446 6.40116 6.56561 6.59293 6.68259 6.75243 6.87112 7.09076 7.47291 7.66179 7.74860 8.04541 8.31470 8.53664 8.93672 9.53741 10.99625 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041402 B = 0.009981 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.129008 B = 2804.779337 C = 3242.524868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.213 3.787 3 H 0.050 0.950 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.541 5.541 13 C 0.060 3.940 14 C -0.066 4.066 15 S -0.308 6.308 16 C -0.060 4.060 17 C 0.084 3.916 18 H 0.044 0.956 19 C -0.147 4.147 20 H 0.026 0.974 21 H 0.011 0.989 22 H 0.088 0.912 23 H 0.261 0.739 24 H 0.104 0.896 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 -2.316 8.166 8.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.068 0.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.266 5.266 13 C -0.070 4.070 14 C -0.215 4.215 15 S -0.081 6.081 16 C -0.209 4.209 17 C -0.027 4.027 18 H 0.062 0.938 19 C -0.206 4.206 20 H 0.045 0.955 21 H 0.030 0.970 22 H 0.106 0.894 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.051 0.949 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.243 -2.766 8.974 9.473 hybrid contribution -0.287 0.136 -1.889 1.916 sum 0.956 -2.630 7.085 7.618 Atomic orbital electron populations 1.22452 1.00776 0.99294 1.00696 1.19347 0.89711 0.95091 0.85158 0.93214 1.21160 1.30951 1.12591 0.89866 0.91876 1.24913 0.95133 0.95070 0.98985 1.69879 1.36789 1.22890 1.23490 0.86543 0.79244 0.79321 0.82586 1.20793 1.21246 1.19853 1.61655 1.61050 1.01382 1.02495 1.22213 0.95552 0.89431 0.99798 1.23585 1.04074 1.01508 0.92311 1.86485 1.93633 1.08637 1.19348 1.23553 1.03996 0.92184 1.01153 1.21594 0.95841 0.94885 0.90348 0.93825 1.22014 1.02908 0.94021 1.01674 0.95490 0.96959 0.89376 0.92937 0.87844 0.94851 0.89508 0.88655 0.88715 0.89523 0.92068 0.90646 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.02 37.16 0.30 -3.76 16 2 C 0.21 5.08 1.84 -68.86 -0.13 4.95 16 3 H 0.05 1.30 6.22 -51.93 -0.32 0.97 16 4 C -0.51 -13.29 7.69 -34.44 -0.26 -13.55 16 5 H 0.06 1.65 6.40 -52.49 -0.34 1.31 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.54 -11.16 4.33 -220.15 -0.95 -12.11 16 13 C 0.06 1.15 4.48 -3.71 -0.02 1.13 16 14 C -0.07 -1.09 6.67 37.29 0.25 -0.84 16 15 S -0.31 -5.04 22.40 -107.50 -2.41 -7.45 16 16 C -0.06 -0.95 5.97 37.28 0.22 -0.72 16 17 C 0.08 1.50 1.75 -67.82 -0.12 1.39 16 18 H 0.04 0.83 7.11 -51.93 -0.37 0.46 16 19 C -0.15 -2.48 8.08 37.16 0.30 -2.18 16 20 H 0.03 0.62 6.97 -51.93 -0.36 0.26 16 21 H 0.01 0.25 5.85 -51.93 -0.30 -0.05 16 22 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 23 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.10 2.16 5.67 -51.93 -0.29 1.86 16 25 H 0.03 0.66 7.18 -51.93 -0.37 0.29 16 26 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.43 5.20 -51.93 -0.27 1.16 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -26.75 252.52 -8.12 -34.87 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.62 Total: 1.19 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 0.45 Total: -12.06 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.33 Total: -36.11 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.41 Total: -7.45 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.75 -8.12 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251756208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.698 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds