Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50709 * 109.47015 * 240.00315 * 2 1 3 5 5 H 1.07996 * 119.99737 * 239.99792 * 4 2 1 6 6 C 1.37872 * 119.99842 * 59.99984 * 4 2 1 7 7 N 1.31518 * 119.99985 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47237 * 89.99980 * 8 6 4 10 10 H 1.48503 * 109.47504 * 210.00047 * 8 6 4 11 11 H 1.48498 * 109.47062 * 330.00144 * 8 6 4 12 12 N 1.46902 * 109.47101 * 120.00606 * 2 1 3 13 13 C 1.46864 * 110.91715 * 66.06895 * 12 2 1 14 14 C 1.53249 * 109.64534 * 162.34468 * 13 12 2 15 15 S 1.81897 * 108.66568 * 61.88673 * 14 13 12 16 16 C 1.81893 * 101.91561 * 308.59595 * 15 14 13 17 17 C 1.46471 * 110.99844 * 299.99564 * 12 2 1 18 18 H 1.08999 * 109.39980 * 77.65021 * 17 12 2 19 19 C 1.52995 * 109.40721 * 317.88918 * 17 12 2 20 20 H 1.09002 * 109.46709 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46816 * 299.99812 * 1 2 3 22 22 H 1.09000 * 109.47166 * 59.99753 * 1 2 3 23 23 H 0.97000 * 119.99909 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.69043 * 42.18511 * 13 12 2 25 25 H 1.09003 * 109.34221 * 282.29473 * 13 12 2 26 26 H 1.09002 * 109.63269 * 302.08308 * 14 13 12 27 27 H 1.08995 * 109.63165 * 181.69050 * 14 13 12 28 28 H 1.09008 * 109.63104 * 171.01209 * 16 15 14 29 29 H 1.09000 * 109.63107 * 291.40264 * 16 15 14 30 30 H 1.09004 * 109.47031 * 299.60445 * 19 17 12 31 31 H 1.08996 * 109.47171 * 59.60143 * 19 17 12 32 32 H 1.09004 * 109.47194 * 179.60159 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 1.6698 -2.1185 1.1610 14 6 2.5403 -2.8896 2.1591 15 16 2.1994 -2.2648 3.8330 16 6 2.4013 -0.4706 3.6126 17 6 1.5501 -0.0285 2.4175 18 1 0.5084 -0.2948 2.5965 19 6 1.6633 1.4876 2.2458 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7087 1.1615 -3.4843 24 1 1.8356 -2.5104 0.1575 25 1 0.6197 -2.2398 1.4270 26 1 3.5930 -2.7393 1.9194 27 1 2.3014 -3.9519 2.1090 28 1 2.0683 0.0485 4.5114 29 1 3.4500 -0.2406 3.4242 30 1 2.7049 1.7566 2.0701 31 1 1.0582 1.8032 1.3959 32 1 1.3075 1.9831 3.1492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251756208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -12.008368 kcal Electronic energy + Delta-G solvation = -13435.477823 eV Core-core repulsion = 11328.533811 eV Total energy + Delta-G solvation = -2106.944012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93752 -35.29478 -33.66122 -32.34262 -28.64995 -28.08207 -27.21692 -23.78805 -23.06613 -20.25332 -18.26093 -17.51974 -17.09772 -16.49476 -15.81267 -15.56220 -14.85746 -14.45739 -14.14081 -13.84992 -13.42309 -13.25417 -13.07378 -12.83244 -12.72454 -12.63663 -12.39203 -12.14135 -12.09701 -11.79439 -11.56193 -10.82383 -10.56081 -10.43080 -8.95877 -8.62325 -8.10773 -6.20681 0.91824 1.41967 1.43982 1.53240 1.59435 2.42498 3.15550 3.20211 3.88505 4.03090 4.24598 4.28589 4.34649 4.46288 4.58538 4.74411 4.77096 4.88038 4.90420 4.96103 5.00921 5.11511 5.27209 5.34160 5.57970 5.73284 5.77512 6.18003 6.44534 6.74518 6.92983 7.48003 8.95211 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041402 B = 0.009981 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.129008 B = 2804.779337 C = 3242.524868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.220 3.780 3 H 0.026 0.974 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.547 5.547 13 C 0.063 3.937 14 C -0.061 4.061 15 S -0.304 6.304 16 C -0.054 4.054 17 C 0.082 3.918 18 H 0.035 0.965 19 C -0.141 4.141 20 H 0.021 0.979 21 H 0.028 0.972 22 H 0.061 0.939 23 H 0.260 0.740 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -2.959 9.256 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.113 3.887 3 H 0.043 0.957 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.272 5.272 13 C -0.066 4.066 14 C -0.209 4.209 15 S -0.077 6.077 16 C -0.203 4.203 17 C -0.028 4.028 18 H 0.053 0.947 19 C -0.200 4.200 20 H 0.040 0.960 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.765 -3.420 10.083 10.793 hybrid contribution -0.462 0.350 -2.171 2.247 sum 1.304 -3.070 7.913 8.587 Atomic orbital electron populations 1.22248 1.00652 0.98644 1.00127 1.19069 0.89597 0.93903 0.86137 0.95664 1.21465 1.30727 1.12546 0.91023 0.92173 1.25635 0.95423 0.95758 1.01687 1.70004 1.37774 1.24065 1.23939 0.85602 0.78818 0.78238 0.79240 1.20369 1.21196 1.19372 1.61604 1.61183 1.02006 1.02441 1.22147 0.95813 0.88937 0.99742 1.23505 1.03262 1.02377 0.91756 1.86510 1.93598 1.08995 1.18567 1.23545 1.03637 0.92046 1.01042 1.21687 0.95804 0.95348 0.89949 0.94680 1.21948 1.02344 0.93544 1.02202 0.95971 0.95287 0.92066 0.93041 0.89800 0.95572 0.89563 0.86431 0.85935 0.89356 0.92372 0.93280 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 8.02 71.98 0.58 -6.90 16 2 C 0.22 10.62 1.84 44.17 0.08 10.70 16 3 H 0.03 1.36 6.22 -2.39 -0.01 1.34 16 4 C -0.52 -27.45 7.69 25.60 0.20 -27.25 16 5 H 0.06 3.15 6.40 -2.91 -0.02 3.13 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -51.52 11.32 21.45 0.24 -51.28 16 8 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.55 -22.29 4.33 -850.43 -3.69 -25.97 16 13 C 0.06 2.39 4.48 86.39 0.39 2.78 16 14 C -0.06 -1.88 6.67 72.07 0.48 -1.40 16 15 S -0.30 -9.14 22.40 -56.49 -1.27 -10.41 16 16 C -0.05 -1.55 5.97 72.06 0.43 -1.12 16 17 C 0.08 2.82 1.75 45.08 0.08 2.90 16 18 H 0.04 1.28 7.11 -2.39 -0.02 1.26 16 19 C -0.14 -4.57 8.08 71.98 0.58 -3.99 16 20 H 0.02 1.02 6.97 -2.39 -0.02 1.00 16 21 H 0.03 1.23 5.85 -2.39 -0.01 1.22 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 23 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.08 3.49 5.67 -2.39 -0.01 3.48 16 25 H 0.03 1.02 7.18 -2.39 -0.02 1.00 16 26 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.84 5.20 -2.39 -0.01 1.83 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -56.37 252.52 1.68 -54.70 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.10 Total: 11.26 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 3.26 Total: -23.10 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -3.44 Total: -77.25 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.27 Total: -10.41 kcal Total: -56.37 1.68 -54.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251756208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.689 kcal (2) G-P(sol) polarization free energy of solvation -56.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds