Wall clock time and date at job start Mon Mar 30 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 N 1.46897 * 109.47091 * 240.00268 * 2 1 3 5 5 C 1.46469 * 111.00146 * 60.21171 * 4 2 1 6 6 C 1.53254 * 109.85666 * 162.23327 * 5 4 2 7 7 S 1.81899 * 108.50709 * 62.00686 * 6 5 4 8 8 C 1.81900 * 101.91234 * 308.68878 * 7 6 5 9 9 C 1.46472 * 110.99886 * 294.22781 * 4 2 1 10 10 H 1.08997 * 109.40050 * 77.65414 * 9 4 2 11 11 C 1.50693 * 109.40729 * 317.80895 * 9 4 2 12 12 H 1.08003 * 120.00438 * 354.51805 * 11 9 4 13 13 C 1.37881 * 120.00074 * 174.52207 * 11 9 4 14 14 N 1.31512 * 120.00167 * 179.97438 * 13 11 9 15 15 Si 1.86798 * 119.99872 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47094 * 89.99829 * 15 13 11 17 17 H 1.48501 * 109.47202 * 210.00371 * 15 13 11 18 18 H 1.48505 * 109.47175 * 330.00170 * 15 13 11 19 19 H 1.09004 * 109.47063 * 175.29612 * 1 2 3 20 20 H 1.09005 * 109.46977 * 55.29997 * 1 2 3 21 21 H 1.08998 * 109.47301 * 295.29596 * 1 2 3 22 22 H 1.09001 * 109.47378 * 120.00367 * 2 1 3 23 23 H 1.09007 * 109.46862 * 66.65567 * 3 2 1 24 24 H 1.09002 * 109.47383 * 186.65318 * 3 2 1 25 25 H 1.09000 * 109.47479 * 306.65668 * 3 2 1 26 26 H 1.08991 * 109.40310 * 282.35220 * 5 4 2 27 27 H 1.08996 * 109.40561 * 42.12062 * 5 4 2 28 28 H 1.08999 * 109.63228 * 302.29402 * 6 5 4 29 29 H 1.09002 * 109.62777 * 181.71089 * 6 5 4 30 30 H 1.09002 * 109.63581 * 291.60632 * 8 7 6 31 31 H 1.09000 * 109.79782 * 171.10868 * 8 7 6 32 32 H 0.97001 * 119.99770 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 1.5541 -0.0253 -2.4175 6 6 2.4062 -0.4685 -3.6118 7 16 2.1991 -2.2618 -3.8350 8 6 2.5353 -2.8898 -2.1613 9 6 1.6655 -2.1133 -1.1666 10 1 0.6156 -2.2311 -1.4347 11 6 1.8914 -2.6537 0.2219 12 1 2.3442 -2.0288 0.9776 13 6 1.5203 -3.9459 0.5276 14 7 1.7180 -4.4177 1.7392 15 14 0.7368 -5.0266 -0.7791 16 1 1.7965 -5.7677 -1.5092 17 1 -0.1878 -5.9927 -0.1334 18 1 -0.0213 -4.1783 -1.7337 19 1 -0.3633 -1.0242 -0.0843 20 1 -0.3633 0.5851 -0.8449 21 1 -0.3634 0.4391 0.9291 22 1 1.8933 -0.5139 0.8899 23 1 1.7771 1.9208 0.9436 24 1 3.1235 1.4448 -0.1191 25 1 1.5827 1.9896 -0.8244 26 1 0.5120 -0.2882 -2.5986 27 1 1.6379 1.0543 -2.2937 28 1 3.4546 -0.2421 -3.4177 29 1 2.0763 0.0529 -4.5104 30 1 3.5880 -2.7429 -1.9195 31 1 2.2923 -3.9511 -2.1094 32 1 1.4565 -5.3267 1.9543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259577657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:40 Heat of formation + Delta-G solvation = 9.650845 kcal Electronic energy + Delta-G solvation = -13583.112078 eV Core-core repulsion = 11477.107280 eV Total energy + Delta-G solvation = -2106.004798 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.43750 -33.41159 -32.38228 -30.86687 -27.62578 -26.64719 -25.27938 -22.68396 -20.95074 -18.74454 -16.82043 -16.22857 -15.33564 -14.60884 -14.31172 -13.79230 -13.44788 -13.26351 -12.80989 -12.48571 -12.11757 -12.02128 -11.65421 -11.39239 -11.21315 -10.91063 -10.63254 -10.57370 -10.48823 -10.12415 -9.63750 -9.35204 -8.85493 -8.62136 -7.46860 -7.12024 -6.21754 -4.22911 2.42834 3.15793 3.20263 3.30203 3.34659 4.27479 4.56687 5.09286 5.36877 5.47831 5.54603 5.71736 5.78877 5.88226 5.97310 6.07692 6.10302 6.21585 6.23688 6.30932 6.35753 6.42092 6.55127 6.88263 7.00549 7.14421 7.33538 7.84157 7.98702 8.49480 8.83210 9.38233 10.89056 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.016521 C = 0.011200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.093838 B = 1694.405847 C = 2499.449558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 C -0.145 4.145 4 N -0.534 5.534 5 C 0.049 3.951 6 C -0.061 4.061 7 S -0.336 6.336 8 C -0.054 4.054 9 C 0.190 3.810 10 H 0.018 0.982 11 C -0.511 4.511 12 H 0.091 0.909 13 C 0.079 3.921 14 N -0.889 5.889 15 Si 0.861 3.139 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.257 1.257 19 H 0.066 0.934 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.109 0.891 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 8.191 -6.283 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.023 4.023 3 C -0.202 4.202 4 N -0.258 5.258 5 C -0.081 4.081 6 C -0.210 4.210 7 S -0.109 6.109 8 C -0.202 4.202 9 C 0.081 3.919 10 H 0.035 0.965 11 C -0.551 4.551 12 H 0.109 0.891 13 C -0.125 4.125 14 N -0.526 5.526 15 Si 0.689 3.311 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.181 1.181 19 H 0.085 0.915 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.127 0.873 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.540 7.479 -7.139 10.353 hybrid contribution -0.919 -0.277 0.317 1.011 sum -1.459 7.202 -6.822 10.026 Atomic orbital electron populations 1.22362 0.98336 1.02407 1.00253 1.21673 0.92300 0.93110 0.95264 1.21955 1.01453 0.96395 1.00437 1.61261 1.60698 1.03341 1.00526 1.22225 0.96397 0.99053 0.90420 1.23348 1.03649 0.93222 1.00734 1.86518 1.93797 1.08073 1.22550 1.24346 1.04943 1.01871 0.89042 1.19766 0.92830 0.83990 0.95343 0.96474 1.21053 1.41576 0.98760 0.93715 0.89112 1.24909 0.94905 0.97569 0.95147 1.69856 1.46802 1.16775 1.19158 0.87177 0.80128 0.81272 0.82477 1.20024 1.21524 1.18123 0.91508 0.94218 0.93167 0.87294 0.92918 0.92299 0.93649 0.94368 0.90412 0.89688 0.88833 0.89485 0.89422 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 8.53 37.16 0.32 -2.78 16 2 C 0.08 1.56 2.53 -67.72 -0.17 1.39 16 3 C -0.14 -2.15 8.82 37.16 0.33 -1.82 16 4 N -0.53 -10.57 4.29 -220.49 -0.95 -11.51 16 5 C 0.05 0.83 4.33 -3.93 -0.02 0.81 16 6 C -0.06 -0.98 6.69 37.29 0.25 -0.73 16 7 S -0.34 -6.62 22.40 -107.50 -2.41 -9.02 16 8 C -0.05 -1.20 5.53 37.29 0.21 -1.00 16 9 C 0.19 4.35 0.78 -68.97 -0.05 4.30 16 10 H 0.02 0.44 5.73 -51.93 -0.30 0.14 16 11 C -0.51 -13.39 8.03 -34.44 -0.28 -13.67 16 12 H 0.09 2.55 5.91 -52.48 -0.31 2.24 16 13 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 14 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 15 Si 0.86 21.01 24.65 -169.99 -4.19 16.82 16 16 H -0.27 -6.58 6.86 56.52 0.39 -6.19 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.20 6.39 56.52 0.36 -5.84 16 19 H 0.07 1.37 6.57 -51.93 -0.34 1.02 16 20 H 0.04 0.63 7.08 -51.93 -0.37 0.26 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.11 2.33 5.42 -51.93 -0.28 2.05 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.61 6.40 -51.93 -0.33 0.28 16 26 H 0.04 0.69 7.21 -51.93 -0.37 0.31 16 27 H 0.08 1.14 5.68 -51.93 -0.29 0.84 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 31 H 0.09 2.06 3.96 -51.93 -0.21 1.85 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -27.68 247.46 -7.09 -34.77 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.53 Total: 1.73 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 0.48 Total: -11.45 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.17 Total: -36.58 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.19 Total: 16.82 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -2.41 Total: -9.02 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.68 -7.09 -34.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.421 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds