Wall clock time and date at job start Mon Mar 30 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47225 * 2 1 4 4 N 1.46897 * 109.47091 * 240.00268 * 2 1 3 5 5 C 1.46469 * 111.00146 * 60.21171 * 4 2 1 6 6 C 1.53254 * 109.85666 * 162.23327 * 5 4 2 7 7 S 1.81899 * 108.50709 * 62.00686 * 6 5 4 8 8 C 1.81900 * 101.91234 * 308.68878 * 7 6 5 9 9 C 1.46472 * 110.99886 * 294.22781 * 4 2 1 10 10 H 1.08997 * 109.40050 * 77.65414 * 9 4 2 11 11 C 1.50693 * 109.40729 * 317.80895 * 9 4 2 12 12 H 1.08003 * 120.00438 * 354.51805 * 11 9 4 13 13 C 1.37881 * 120.00074 * 174.52207 * 11 9 4 14 14 N 1.31512 * 120.00167 * 179.97438 * 13 11 9 15 15 Si 1.86798 * 119.99872 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47094 * 89.99829 * 15 13 11 17 17 H 1.48501 * 109.47202 * 210.00371 * 15 13 11 18 18 H 1.48505 * 109.47175 * 330.00170 * 15 13 11 19 19 H 1.09004 * 109.47063 * 175.29612 * 1 2 3 20 20 H 1.09005 * 109.46977 * 55.29997 * 1 2 3 21 21 H 1.08998 * 109.47301 * 295.29596 * 1 2 3 22 22 H 1.09001 * 109.47378 * 120.00367 * 2 1 3 23 23 H 1.09007 * 109.46862 * 66.65567 * 3 2 1 24 24 H 1.09002 * 109.47383 * 186.65318 * 3 2 1 25 25 H 1.09000 * 109.47479 * 306.65668 * 3 2 1 26 26 H 1.08991 * 109.40310 * 282.35220 * 5 4 2 27 27 H 1.08996 * 109.40561 * 42.12062 * 5 4 2 28 28 H 1.08999 * 109.63228 * 302.29402 * 6 5 4 29 29 H 1.09002 * 109.62777 * 181.71089 * 6 5 4 30 30 H 1.09002 * 109.63581 * 291.60632 * 8 7 6 31 31 H 1.09000 * 109.79782 * 171.10868 * 8 7 6 32 32 H 0.97001 * 119.99770 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 1.5541 -0.0253 -2.4175 6 6 2.4062 -0.4685 -3.6118 7 16 2.1991 -2.2618 -3.8350 8 6 2.5353 -2.8898 -2.1613 9 6 1.6655 -2.1133 -1.1666 10 1 0.6156 -2.2311 -1.4347 11 6 1.8914 -2.6537 0.2219 12 1 2.3442 -2.0288 0.9776 13 6 1.5203 -3.9459 0.5276 14 7 1.7180 -4.4177 1.7392 15 14 0.7368 -5.0266 -0.7791 16 1 1.7965 -5.7677 -1.5092 17 1 -0.1878 -5.9927 -0.1334 18 1 -0.0213 -4.1783 -1.7337 19 1 -0.3633 -1.0242 -0.0843 20 1 -0.3633 0.5851 -0.8449 21 1 -0.3634 0.4391 0.9291 22 1 1.8933 -0.5139 0.8899 23 1 1.7771 1.9208 0.9436 24 1 3.1235 1.4448 -0.1191 25 1 1.5827 1.9896 -0.8244 26 1 0.5120 -0.2882 -2.5986 27 1 1.6379 1.0543 -2.2937 28 1 3.4546 -0.2421 -3.4177 29 1 2.0763 0.0529 -4.5104 30 1 3.5880 -2.7429 -1.9195 31 1 2.2923 -3.9511 -2.1094 32 1 1.4565 -5.3267 1.9543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259577657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:39 Heat of formation + Delta-G solvation = -8.938912 kcal Electronic energy + Delta-G solvation = -13583.918190 eV Core-core repulsion = 11477.107280 eV Total energy + Delta-G solvation = -2106.810910 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00223 -35.29055 -33.93126 -32.60806 -29.12695 -28.01576 -27.22263 -24.15718 -22.63104 -20.38470 -18.77193 -17.80776 -16.92320 -16.18502 -16.13606 -15.46050 -15.00511 -14.77135 -14.53100 -14.10069 -13.60063 -13.40076 -13.30848 -12.92058 -12.73341 -12.56504 -12.39781 -12.18966 -12.07147 -11.71847 -11.49785 -10.93677 -10.84037 -10.43648 -9.05871 -8.67988 -8.34802 -6.37868 0.91113 1.21020 1.29451 1.37105 1.62536 2.23178 2.97487 3.08270 3.99952 4.10174 4.21689 4.27505 4.35993 4.47017 4.49966 4.54701 4.61231 4.71106 4.84790 4.91614 4.97321 5.08165 5.20567 5.27678 5.42420 5.48276 5.58227 5.98031 6.33390 6.68186 6.71214 7.26666 8.79278 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.016521 C = 0.011200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.093838 B = 1694.405847 C = 2499.449558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 C -0.133 4.133 4 N -0.541 5.541 5 C 0.048 3.952 6 C -0.052 4.052 7 S -0.340 6.340 8 C -0.057 4.057 9 C 0.200 3.800 10 H 0.001 0.999 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.030 3.970 14 N -0.934 5.934 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.253 1.253 19 H 0.030 0.970 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 10.243 -8.372 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.028 4.028 3 C -0.191 4.191 4 N -0.266 5.266 5 C -0.081 4.081 6 C -0.200 4.200 7 S -0.113 6.113 8 C -0.206 4.206 9 C 0.090 3.910 10 H 0.018 0.982 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.169 4.169 14 N -0.574 5.574 15 Si 0.740 3.260 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.177 1.177 19 H 0.049 0.951 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.809 9.550 -9.241 13.313 hybrid contribution -0.813 -0.778 0.962 1.480 sum -1.622 8.772 -8.279 12.171 Atomic orbital electron populations 1.22276 0.97725 1.00632 1.02013 1.21655 0.92820 0.94990 0.93317 1.21847 1.01357 0.93554 1.02300 1.61263 1.61095 1.01875 1.02363 1.22358 0.96044 1.00637 0.89096 1.23547 1.04294 0.90167 1.02000 1.86503 1.93775 1.11537 1.19514 1.24006 1.04120 1.01074 0.91388 1.19472 0.91915 0.86295 0.93317 0.98186 1.21258 1.39722 0.98146 0.95136 0.91971 1.25540 0.95767 0.98986 0.96610 1.69972 1.49063 1.17303 1.21024 0.86325 0.79452 0.79792 0.80388 1.19330 1.21508 1.17696 0.95125 0.91842 0.91841 0.91357 0.91443 0.92421 0.91272 0.95004 0.86994 0.88809 0.85092 0.90165 0.90994 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 8.53 71.98 0.61 -5.11 16 2 C 0.08 2.88 2.53 44.91 0.11 2.99 16 3 C -0.13 -3.53 8.82 71.98 0.63 -2.89 16 4 N -0.54 -20.66 4.29 -851.51 -3.65 -24.31 16 5 C 0.05 1.44 4.33 86.47 0.37 1.81 16 6 C -0.05 -1.46 6.69 72.07 0.48 -0.98 16 7 S -0.34 -12.57 22.40 -56.49 -1.27 -13.83 16 8 C -0.06 -2.53 5.53 72.07 0.40 -2.13 16 9 C 0.20 9.16 0.78 44.34 0.03 9.19 16 10 H 0.00 0.03 5.73 -2.39 -0.01 0.02 16 11 C -0.50 -27.21 8.03 25.60 0.21 -27.00 16 12 H 0.06 3.68 5.91 -2.91 -0.02 3.66 16 13 C 0.03 1.72 5.45 84.66 0.46 2.18 16 14 N -0.93 -56.31 13.96 21.45 0.30 -56.01 16 15 Si 0.91 44.30 24.65 68.60 1.69 45.99 16 16 H -0.27 -12.57 6.86 99.48 0.68 -11.89 16 17 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 18 H -0.25 -11.96 6.39 99.48 0.64 -11.32 16 19 H 0.03 1.24 6.57 -2.38 -0.02 1.23 16 20 H 0.06 1.84 7.08 -2.38 -0.02 1.82 16 21 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 22 H 0.07 3.02 5.42 -2.39 -0.01 3.01 16 23 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.51 6.40 -2.39 -0.02 1.50 16 26 H 0.03 1.03 7.21 -2.39 -0.02 1.01 16 27 H 0.11 2.66 5.68 -2.39 -0.01 2.65 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.07 3.36 3.96 -2.39 -0.01 3.35 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -61.23 247.46 1.40 -59.83 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.01 Total: 10.28 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.32 Total: -21.94 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.35 Total: -80.32 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.69 Total: 45.99 kcal Atomic # 16 Polarization: -12.57 SS G_CDS: -1.27 Total: -13.83 kcal Total: -61.23 1.40 -59.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.892 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds