Wall clock time and date at job start Mon Mar 30 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47183 * 179.97438 * 3 2 1 5 5 C 1.46465 * 111.00164 * 73.43271 * 4 3 2 6 6 C 1.53254 * 109.86360 * 197.76844 * 5 4 3 7 7 S 1.81895 * 108.50016 * 297.99424 * 6 5 4 8 8 C 1.81896 * 101.91533 * 51.30515 * 7 6 5 9 9 C 1.46474 * 111.00074 * 199.41254 * 4 3 2 10 10 H 1.09002 * 109.40361 * 282.35015 * 9 4 3 11 11 C 1.50696 * 109.40537 * 42.11728 * 9 4 3 12 12 H 1.07999 * 120.00054 * 55.16705 * 11 9 4 13 13 C 1.37879 * 119.99738 * 235.16765 * 11 9 4 14 14 N 1.31517 * 120.00127 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99955 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47144 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47277 * 120.00039 * 15 13 11 18 18 H 1.48511 * 109.47088 * 240.00223 * 15 13 11 19 19 H 1.08996 * 109.47324 * 300.00014 * 1 2 3 20 20 H 1.08998 * 109.46730 * 60.00451 * 1 2 3 21 21 H 1.09000 * 109.46919 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47316 * 239.99198 * 2 1 3 23 23 H 1.09008 * 109.46934 * 119.99645 * 2 1 3 24 24 H 1.09006 * 109.47530 * 59.99971 * 3 2 1 25 25 H 1.08998 * 109.46961 * 299.99407 * 3 2 1 26 26 H 1.09005 * 109.40272 * 317.88330 * 5 4 3 27 27 H 1.08999 * 109.40939 * 77.64663 * 5 4 3 28 28 H 1.08997 * 109.62761 * 57.69735 * 6 5 4 29 29 H 1.09000 * 109.63182 * 178.09339 * 6 5 4 30 30 H 1.09004 * 109.63237 * 68.40353 * 8 7 6 31 31 H 1.09005 * 109.63020 * 188.98577 * 8 7 6 32 32 H 0.96998 * 119.99696 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0345 1.0524 -1.3097 6 6 5.5025 0.6325 -1.1780 7 16 6.4607 2.0612 -0.5871 8 6 5.5015 2.5805 0.8686 9 6 4.0337 2.7323 0.4551 10 1 3.9585 3.4591 -0.3537 11 6 3.2284 3.2128 1.6347 12 1 3.1168 2.5831 2.5050 13 6 2.6340 4.4565 1.6029 14 7 2.7695 5.2232 0.5429 15 14 1.6363 5.0526 3.0653 16 1 1.6366 4.0099 4.1228 17 1 2.2383 6.3005 3.5997 18 1 0.2402 5.3209 2.6358 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9562 -0.8900 26 1 3.4524 0.2171 -1.6992 27 1 3.9592 1.8959 -1.9959 28 1 5.5865 -0.1859 -0.4630 29 1 5.8799 0.3109 -2.1487 30 1 5.5857 1.8261 1.6508 31 1 5.8795 3.5352 1.2345 32 1 2.3510 6.0979 0.5204 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259626145.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:47 Heat of formation + Delta-G solvation = -10.275221 kcal Electronic energy + Delta-G solvation = -13239.314105 eV Core-core repulsion = 11132.445248 eV Total energy + Delta-G solvation = -2106.868857 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.58857 -33.48509 -32.72933 -30.42481 -28.85321 -25.36928 -24.35880 -22.28827 -20.47303 -19.44476 -16.84553 -15.54461 -15.06704 -14.60834 -14.45902 -13.78599 -13.26152 -13.06585 -12.73388 -12.42960 -12.28604 -11.71138 -11.30550 -11.10957 -11.05525 -10.86133 -10.68708 -10.54390 -10.26654 -10.01077 -9.73150 -9.23692 -8.83605 -8.61250 -7.22759 -6.90548 -6.19419 -4.24775 2.61857 3.18495 3.28330 3.31830 3.41482 4.28301 4.79119 5.19030 5.52951 5.55302 5.62161 5.74147 5.88143 5.94073 6.12350 6.21415 6.35247 6.39257 6.44279 6.47638 6.50823 6.60835 6.78531 6.97633 7.29823 7.52798 7.71268 7.84999 8.24264 8.53708 8.90844 9.38614 10.86334 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.013905 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.514362 B = 2013.117047 C = 3018.378739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.070 3.930 4 N -0.553 5.553 5 C 0.054 3.946 6 C -0.060 4.060 7 S -0.338 6.338 8 C -0.034 4.034 9 C 0.194 3.806 10 H 0.058 0.942 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.884 5.884 15 Si 0.895 3.105 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.282 1.282 19 H 0.054 0.946 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.017 0.983 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 -7.298 -1.782 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.057 4.057 4 N -0.278 5.278 5 C -0.076 4.076 6 C -0.209 4.209 7 S -0.111 6.111 8 C -0.182 4.182 9 C 0.087 3.913 10 H 0.076 0.924 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.722 3.278 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.208 1.208 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.272 -7.013 -1.975 7.291 hybrid contribution -1.749 0.488 0.595 1.911 sum -1.477 -6.525 -1.380 6.831 Atomic orbital electron populations 1.21715 0.96686 1.00488 1.01689 1.21581 0.94427 0.98565 1.01173 1.21924 0.87294 0.94184 1.02322 1.61412 1.07689 1.35071 1.23640 1.22156 0.93356 0.99527 0.92608 1.23297 0.97291 0.97422 1.02903 1.86467 1.42897 1.40544 1.41187 1.23933 0.98248 1.02564 0.93477 1.19654 0.88526 0.85661 0.97491 0.92411 1.20960 1.31278 1.00937 1.01446 0.91866 1.25063 0.95891 0.96705 0.96019 1.69923 1.43634 1.10365 1.28188 0.86488 0.79802 0.78950 0.82579 1.19367 1.20764 1.20807 0.92697 0.93279 0.93555 0.93444 0.91972 0.87963 0.96508 0.91544 0.94651 0.90151 0.89195 0.91172 0.88838 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -1.98 6.01 -26.73 -0.16 -2.14 16 3 C 0.07 1.45 4.73 -3.83 -0.02 1.43 16 4 N -0.55 -11.87 4.25 -228.43 -0.97 -12.84 16 5 C 0.05 1.02 5.25 -3.93 -0.02 0.99 16 6 C -0.06 -1.06 6.69 37.29 0.25 -0.81 16 7 S -0.34 -6.88 22.39 -107.50 -2.41 -9.29 16 8 C -0.03 -0.76 5.95 37.28 0.22 -0.54 16 9 C 0.19 4.71 2.21 -68.97 -0.15 4.56 16 10 H 0.06 1.62 6.69 -51.93 -0.35 1.28 16 11 C -0.51 -13.04 5.97 -34.44 -0.21 -13.25 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -24.57 12.61 55.43 0.70 -23.87 16 15 Si 0.89 20.29 29.54 -169.99 -5.02 15.26 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.74 6.61 -51.93 -0.34 0.40 16 23 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 24 H 0.10 2.36 5.87 -51.93 -0.30 2.05 16 25 H 0.02 0.36 8.03 -51.93 -0.42 -0.05 16 26 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 27 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -26.73 265.02 -8.60 -35.34 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.08 Total: 1.23 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 0.18 Total: -9.83 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.27 Total: -36.71 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -2.41 Total: -9.29 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.73 -8.60 -35.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626145.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.062 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds