Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47242 * 2 1 4 4 C 1.38941 * 119.70489 * 90.00235 * 3 2 1 5 5 C 1.37960 * 120.69778 * 180.02562 * 4 3 2 6 6 C 1.38932 * 119.89499 * 359.96879 * 5 4 3 7 7 N 1.38038 * 132.79509 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.60230 * 0.02562 * 7 6 5 9 9 C 1.38312 * 108.79767 * 180.02562 * 7 6 5 10 10 C 1.39916 * 125.69889 * 180.26546 * 9 7 6 11 11 H 1.08001 * 120.00202 * 162.46788 * 10 9 7 12 12 C 1.40189 * 119.99993 * 342.45832 * 10 9 7 13 13 N 1.30750 * 119.99853 * 166.05428 * 12 10 9 14 14 Si 1.86794 * 120.00043 * 346.06067 * 12 10 9 15 15 H 1.48500 * 109.47500 * 87.31180 * 14 12 10 16 16 H 1.48501 * 109.47176 * 207.31655 * 14 12 10 17 17 H 1.48497 * 109.47175 * 327.31454 * 14 12 10 18 18 C 1.39134 * 108.60594 * 0.02562 * 9 7 6 19 19 C 1.40927 * 107.49547 * 359.97438 * 18 9 7 20 20 C 1.36436 * 119.70190 * 269.99458 * 3 2 1 21 21 H 1.09004 * 109.47287 * 59.99850 * 1 2 3 22 22 H 1.08999 * 109.47684 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47433 * 300.00141 * 1 2 3 24 24 H 1.08998 * 109.47010 * 239.99752 * 2 1 3 25 25 H 1.08999 * 109.46982 * 119.99806 * 2 1 3 26 26 H 1.08002 * 119.64879 * 359.97438 * 4 3 2 27 27 H 1.08006 * 120.04791 * 179.97438 * 5 4 3 28 28 H 0.97005 * 120.00102 * 180.02562 * 13 12 10 29 29 H 1.08002 * 126.25175 * 180.02562 * 18 9 7 30 30 H 1.07996 * 120.10362 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0699 1.2068 5 6 2.7212 3.3705 1.2307 6 6 2.9590 4.0429 0.0385 7 7 3.4093 5.3164 -0.2463 8 1 3.6480 5.9906 0.4089 9 6 3.4641 5.4730 -1.6195 10 6 3.8776 6.6271 -2.2937 11 1 4.1566 6.5732 -3.3357 12 6 3.9297 7.8537 -1.6168 13 7 4.5638 8.8666 -2.1472 14 14 3.0933 8.0407 0.0429 15 1 4.0291 7.6253 1.1185 16 1 2.7057 9.4599 0.2448 17 1 1.8800 7.1855 0.0850 18 6 3.0446 4.2893 -2.2184 19 6 2.7247 3.3831 -1.1876 20 6 2.2578 2.0581 -1.1851 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0780 1.5510 2.1360 27 1 2.8957 3.8652 2.1749 28 1 4.6002 9.7153 -1.6787 29 1 2.9772 4.0993 -3.2794 30 1 2.0772 1.5458 -2.1185 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259667556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = 15.788417 kcal Electronic energy + Delta-G solvation = -13584.512765 eV Core-core repulsion = 11343.330161 eV Total energy + Delta-G solvation = -2241.182604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.77082 -38.37439 -35.59393 -33.86850 -32.63046 -30.71842 -29.30052 -27.06923 -24.22358 -22.81343 -22.04660 -20.69119 -19.67344 -18.67687 -16.87412 -16.25337 -15.86183 -15.29932 -15.20852 -14.85903 -14.39598 -14.12115 -14.04500 -13.43229 -13.32670 -13.06878 -12.87470 -12.73203 -12.10500 -11.87669 -11.80654 -11.61927 -11.42492 -11.27947 -10.42687 -9.08376 -8.99176 -8.49044 -6.49850 0.43426 0.93685 0.98188 1.12527 1.25006 1.78093 1.90337 2.47589 3.02917 3.26988 4.02072 4.11054 4.37737 4.45227 4.67212 4.70787 4.74275 4.80854 4.92083 4.99440 5.15904 5.17634 5.31421 5.42296 5.46542 5.50438 5.64396 5.83643 6.02474 6.11235 6.13549 6.30644 6.62745 6.72781 7.00871 8.01832 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.056302 B = 0.007985 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.196173 B = 3505.767717 C = 3812.105073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.149 4.149 5 C -0.124 4.124 6 C 0.014 3.986 7 N -0.628 5.628 8 H 0.396 0.604 9 C 0.251 3.749 10 C -0.472 4.472 11 H 0.081 0.919 12 C 0.049 3.951 13 N -0.828 5.828 14 Si 0.936 3.064 15 H -0.242 1.242 16 H -0.252 1.252 17 H -0.258 1.258 18 C -0.388 4.388 19 C -0.058 4.058 20 C -0.139 4.139 21 H 0.042 0.958 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.301 0.699 29 H 0.116 0.884 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -9.537 8.394 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.097 4.097 4 C -0.168 4.168 5 C -0.145 4.145 6 C -0.089 4.089 7 N -0.245 5.245 8 H 0.238 0.762 9 C 0.144 3.856 10 C -0.505 4.505 11 H 0.099 0.901 12 C -0.169 4.169 13 N -0.454 5.454 14 Si 0.758 3.242 15 H -0.167 1.167 16 H -0.177 1.177 17 H -0.183 1.183 18 C -0.411 4.411 19 C -0.063 4.063 20 C -0.158 4.158 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.107 -9.189 8.404 13.459 hybrid contribution 0.180 1.148 0.187 1.177 sum -4.927 -8.042 8.591 12.757 Atomic orbital electron populations 1.21719 0.94506 1.02154 1.01537 1.20472 0.96332 0.91087 1.03129 1.19539 1.00593 0.97315 0.92215 1.20719 1.04336 0.93689 0.98054 1.20231 1.04157 0.95914 0.94181 1.18700 1.07847 0.85975 0.96358 1.42788 1.62700 1.12453 1.06518 0.76214 1.18182 0.91965 0.95006 0.80475 1.18749 1.41662 0.90672 0.99384 0.90138 1.26748 0.92903 0.94769 1.02466 1.69590 1.31185 1.03945 1.40684 0.86009 0.80617 0.79827 0.77746 1.16738 1.17685 1.18282 1.20607 1.27591 0.95868 0.97029 1.18407 1.00599 0.94667 0.92607 1.20276 1.04631 0.92595 0.98280 0.93929 0.90715 0.92844 0.91152 0.89819 0.83821 0.85633 0.88791 0.86596 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.32 16 2 C -0.07 -1.74 6.04 29.85 0.18 -1.56 16 3 C -0.10 -3.16 5.10 -20.12 -0.10 -3.26 16 4 C -0.15 -4.84 9.67 22.37 0.22 -4.63 16 5 C -0.12 -4.65 10.07 22.37 0.23 -4.42 16 6 C 0.01 0.63 7.24 39.06 0.28 0.92 16 7 N -0.63 -30.36 4.78 -180.16 -0.86 -31.22 16 8 H 0.40 17.49 4.32 -92.71 -0.40 17.09 16 9 C 0.25 13.42 6.16 38.74 0.24 13.66 16 10 C -0.47 -26.26 9.84 23.15 0.23 -26.03 16 11 H 0.08 4.79 8.06 -2.91 -0.02 4.76 16 12 C 0.05 2.51 5.52 85.33 0.47 2.98 16 13 N -0.83 -42.98 13.92 21.87 0.30 -42.67 16 14 Si 0.94 38.47 24.70 68.60 1.69 40.16 16 15 H -0.24 -8.96 6.73 99.48 0.67 -8.29 16 16 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 17 H -0.26 -11.27 6.87 99.48 0.68 -10.59 16 18 C -0.39 -20.27 10.88 23.14 0.25 -20.01 16 19 C -0.06 -2.78 6.14 -21.35 -0.13 -2.91 16 20 C -0.14 -5.53 9.70 22.40 0.22 -5.32 16 21 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 25 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 26 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 27 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 28 H 0.30 13.79 8.29 -92.70 -0.77 13.02 16 29 H 0.12 5.87 8.06 -2.91 -0.02 5.85 16 30 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -59.92 253.83 4.60 -55.32 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.68 Total: 31.32 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 2.79 Total: -52.91 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.56 Total: -73.89 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.69 Total: 40.16 kcal Total: -59.92 4.60 -55.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.107 kcal (2) G-P(sol) polarization free energy of solvation -59.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds