Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 119.99623 * 2 1 4 4 C 1.38220 * 119.99721 * 179.79266 * 3 2 1 5 5 C 1.38251 * 119.99665 * 0.43701 * 4 3 2 6 6 C 1.38205 * 120.00392 * 359.81621 * 5 4 3 7 7 C 1.38206 * 120.00256 * 180.27460 * 2 1 3 8 8 C 1.50706 * 119.99856 * 359.97438 * 7 2 1 9 9 C 1.53004 * 109.46941 * 185.38483 * 8 7 2 10 10 C 1.47193 * 109.46995 * 65.38465 * 8 7 2 11 11 N 3.79941 * 68.62396 * 219.43718 * 2 1 3 12 12 C 1.50698 * 109.47169 * 305.38023 * 8 7 2 13 13 H 1.08006 * 119.99880 * 354.73899 * 12 8 7 14 14 C 1.37870 * 119.99916 * 174.73578 * 12 8 7 15 15 N 1.31515 * 120.00062 * 0.02562 * 14 12 8 16 16 Si 1.86807 * 119.99926 * 180.02562 * 14 12 8 17 17 H 1.48500 * 109.47106 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47227 * 120.00184 * 16 14 12 19 19 H 1.48502 * 109.46784 * 240.00126 * 16 14 12 20 20 H 1.08995 * 109.46993 * 264.12639 * 1 2 3 21 21 H 1.09002 * 109.47215 * 144.12645 * 1 2 3 22 22 H 1.08997 * 109.47410 * 24.12703 * 1 2 3 23 23 H 1.08002 * 120.00326 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.00007 * 180.27294 * 4 3 2 25 25 H 1.08004 * 119.99365 * 179.83745 * 5 4 3 26 26 H 1.08005 * 120.00446 * 180.02562 * 6 5 4 27 27 H 1.08993 * 109.47481 * 56.88786 * 9 8 7 28 28 H 1.08995 * 109.47216 * 176.89149 * 9 8 7 29 29 H 1.09005 * 109.46693 * 296.88271 * 9 8 7 30 30 H 0.97008 * 119.99815 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1968 -0.0058 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0114 9 6 2.4335 -3.6623 0.1183 10 6 0.6982 -2.6321 -1.2734 11 7 0.1222 -2.7325 -2.2475 12 6 0.4815 -2.5310 1.1473 13 1 0.4804 -1.7274 1.8688 14 6 -0.3983 -3.5834 1.2861 15 7 -0.3967 -4.5622 0.4077 16 14 -1.5928 -3.6191 2.7220 17 1 -1.3940 -2.4102 3.5613 18 1 -2.9855 -3.6413 2.2070 19 1 -1.3478 -4.8344 3.5395 20 1 -0.3633 -0.1052 1.0222 21 1 -0.3634 -0.8327 -0.6022 22 1 -0.3634 0.9378 -0.4200 23 1 1.6582 2.1327 -0.0004 24 1 4.1204 2.1327 0.0088 25 1 5.3517 0.0002 0.0003 26 1 4.1207 -2.1322 -0.0091 27 1 3.0246 -3.5363 1.0252 28 1 1.8852 -4.6029 0.1697 29 1 3.0950 -3.6744 -0.7480 30 1 -1.0160 -5.3025 0.5052 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259686726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = 40.295459 kcal Electronic energy + Delta-G solvation = -14144.063491 eV Core-core repulsion = 11903.943592 eV Total energy + Delta-G solvation = -2240.119899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.26715 -35.93586 -33.52149 -32.09399 -31.77656 -28.53932 -26.28714 -25.41606 -23.25227 -20.70646 -20.39892 -17.57843 -16.25922 -15.12893 -14.84123 -14.39150 -13.82176 -13.30961 -12.99254 -12.76643 -12.41417 -11.90478 -11.61768 -11.35001 -11.25821 -11.20214 -10.97416 -10.85860 -10.68279 -10.57371 -10.36290 -10.13001 -9.54964 -9.26851 -8.65810 -8.19921 -7.88248 -6.25400 -4.36991 1.99417 2.00260 3.19302 3.28879 3.31479 4.19907 4.32644 4.43633 4.46809 5.06380 5.42662 5.46830 5.56511 5.68933 5.87091 6.07711 6.08867 6.33945 6.48953 6.53259 6.59775 6.66079 6.76218 6.92471 7.02872 7.04077 7.19533 7.39320 7.57182 7.65376 7.79879 7.96082 8.61967 9.23719 9.30684 10.78989 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.011475 C = 0.010714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.820120 B = 2439.560881 C = 2612.665003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.045 4.045 8 C 0.189 3.811 9 C -0.131 4.131 10 C 0.279 3.721 11 N -0.517 5.517 12 C -0.511 4.511 13 H 0.077 0.923 14 C 0.068 3.932 15 N -0.874 5.874 16 Si 0.899 3.101 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.281 1.281 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 6.870 2.478 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.064 4.064 3 C -0.149 4.149 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.046 4.046 8 C 0.185 3.815 9 C -0.190 4.190 10 C -0.037 4.037 11 N -0.194 5.194 12 C -0.549 4.549 13 H 0.095 0.905 14 C -0.137 4.137 15 N -0.509 5.509 16 Si 0.726 3.274 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.207 1.207 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.061 0.939 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.189 6.523 0.947 8.389 hybrid contribution -0.479 -0.132 1.169 1.270 sum 4.711 6.392 2.116 8.217 Atomic orbital electron populations 1.20914 0.91120 1.01127 1.03371 1.19838 0.96485 0.92285 0.97835 1.20953 0.94147 0.97180 1.02602 1.20933 0.94258 0.97481 1.02558 1.20984 0.99075 0.92730 1.02566 1.21217 0.93964 0.98067 1.00340 1.19968 0.93079 0.94799 0.96767 1.14912 0.91338 0.89224 0.86028 1.21858 0.97309 1.01267 0.98516 1.29536 0.91852 0.89775 0.92500 1.80846 1.12165 1.11647 1.14726 1.20914 1.18110 1.07739 1.08177 0.90488 1.25042 0.97151 0.95104 0.96382 1.69870 1.36637 1.09816 1.34570 0.86388 0.80591 0.78430 0.81943 1.19253 1.20882 1.20655 0.90277 0.90404 0.93899 0.86926 0.87129 0.86943 0.85625 0.92857 0.89692 0.95724 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.29 36.01 0.30 -1.82 16 2 C -0.06 -1.25 5.56 -104.63 -0.58 -1.83 16 3 C -0.13 -2.17 9.68 -39.58 -0.38 -2.55 16 4 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 5 C -0.14 -2.10 10.05 -39.59 -0.40 -2.49 16 6 C -0.12 -2.10 8.98 -39.59 -0.36 -2.45 16 7 C -0.04 -0.92 4.69 -104.62 -0.49 -1.41 16 8 C 0.19 4.34 0.46 -159.60 -0.07 4.27 16 9 C -0.13 -2.81 6.95 37.16 0.26 -2.55 16 10 C 0.28 7.07 9.72 -20.76 -0.20 6.87 16 11 N -0.52 -13.81 18.54 42.16 0.78 -13.03 16 12 C -0.51 -12.42 5.92 -34.44 -0.20 -12.63 16 13 H 0.08 1.84 6.50 -52.48 -0.34 1.50 16 14 C 0.07 1.72 5.13 -17.82 -0.09 1.63 16 15 N -0.87 -23.30 10.51 55.43 0.58 -22.72 16 16 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H 0.08 1.53 6.96 -51.93 -0.36 1.17 16 21 H 0.08 1.75 5.01 -51.93 -0.26 1.49 16 22 H 0.04 0.71 8.05 -51.93 -0.42 0.30 16 23 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 24 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 25 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 26 H 0.13 2.05 5.92 -52.48 -0.31 1.74 16 27 H 0.05 1.03 7.58 -51.93 -0.39 0.64 16 28 H 0.08 2.03 6.44 -51.93 -0.33 1.69 16 29 H 0.02 0.47 7.46 -51.93 -0.39 0.08 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -27.70 251.77 -5.69 -33.39 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.21 Total: 1.15 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.62 Total: -17.40 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 1.36 Total: -35.75 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.70 -5.69 -33.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.688 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds