Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 119.99623 * 2 1 4 4 C 1.38220 * 119.99721 * 179.79266 * 3 2 1 5 5 C 1.38251 * 119.99665 * 0.43701 * 4 3 2 6 6 C 1.38205 * 120.00392 * 359.81621 * 5 4 3 7 7 C 1.38206 * 120.00256 * 180.27460 * 2 1 3 8 8 C 1.50706 * 119.99856 * 359.97438 * 7 2 1 9 9 C 1.53004 * 109.46941 * 185.38483 * 8 7 2 10 10 C 1.47193 * 109.46995 * 65.38465 * 8 7 2 11 11 N 3.79941 * 68.62396 * 219.43718 * 2 1 3 12 12 C 1.50698 * 109.47169 * 305.38023 * 8 7 2 13 13 H 1.08006 * 119.99880 * 354.73899 * 12 8 7 14 14 C 1.37870 * 119.99916 * 174.73578 * 12 8 7 15 15 N 1.31515 * 120.00062 * 0.02562 * 14 12 8 16 16 Si 1.86807 * 119.99926 * 180.02562 * 14 12 8 17 17 H 1.48500 * 109.47106 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47227 * 120.00184 * 16 14 12 19 19 H 1.48502 * 109.46784 * 240.00126 * 16 14 12 20 20 H 1.08995 * 109.46993 * 264.12639 * 1 2 3 21 21 H 1.09002 * 109.47215 * 144.12645 * 1 2 3 22 22 H 1.08997 * 109.47410 * 24.12703 * 1 2 3 23 23 H 1.08002 * 120.00326 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.00007 * 180.27294 * 4 3 2 25 25 H 1.08004 * 119.99365 * 179.83745 * 5 4 3 26 26 H 1.08005 * 120.00446 * 180.02562 * 6 5 4 27 27 H 1.08993 * 109.47481 * 56.88786 * 9 8 7 28 28 H 1.08995 * 109.47216 * 176.89149 * 9 8 7 29 29 H 1.09005 * 109.46693 * 296.88271 * 9 8 7 30 30 H 0.97008 * 119.99815 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0043 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1968 -0.0058 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0114 9 6 2.4335 -3.6623 0.1183 10 6 0.6982 -2.6321 -1.2734 11 7 0.1222 -2.7325 -2.2475 12 6 0.4815 -2.5310 1.1473 13 1 0.4804 -1.7274 1.8688 14 6 -0.3983 -3.5834 1.2861 15 7 -0.3967 -4.5622 0.4077 16 14 -1.5928 -3.6191 2.7220 17 1 -1.3940 -2.4102 3.5613 18 1 -2.9855 -3.6413 2.2070 19 1 -1.3478 -4.8344 3.5395 20 1 -0.3633 -0.1052 1.0222 21 1 -0.3634 -0.8327 -0.6022 22 1 -0.3634 0.9378 -0.4200 23 1 1.6582 2.1327 -0.0004 24 1 4.1204 2.1327 0.0088 25 1 5.3517 0.0002 0.0003 26 1 4.1207 -2.1322 -0.0091 27 1 3.0246 -3.5363 1.0252 28 1 1.8852 -4.6029 0.1697 29 1 3.0950 -3.6744 -0.7480 30 1 -1.0160 -5.3025 0.5052 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259686726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = 25.967325 kcal Electronic energy + Delta-G solvation = -14144.684805 eV Core-core repulsion = 11903.943592 eV Total energy + Delta-G solvation = -2240.741213 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.69935 -37.66036 -35.43664 -33.56736 -33.44186 -30.00755 -27.83091 -27.11854 -24.92602 -22.13912 -21.81297 -19.45040 -17.72206 -16.81313 -16.45780 -15.86203 -15.36330 -14.81990 -14.58823 -14.47709 -13.78445 -13.63099 -13.45609 -13.14459 -12.83126 -12.73897 -12.68984 -12.56408 -12.33434 -12.22751 -12.13592 -11.63325 -11.16297 -11.08063 -10.57661 -9.51175 -9.26512 -8.17236 -6.32618 0.67210 0.69683 1.42232 1.47072 1.56692 2.33379 2.42826 2.51909 3.02218 3.18681 3.94066 4.17112 4.21189 4.34935 4.44243 4.64315 4.76546 4.88902 4.98031 5.01581 5.03232 5.16557 5.29327 5.36987 5.53882 5.63286 5.76748 5.80081 5.86259 6.09736 6.17323 6.36377 6.68890 7.28554 7.36882 8.85730 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.011475 C = 0.010714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.820120 B = 2439.560881 C = 2612.665003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.127 4.127 7 C -0.075 4.075 8 C 0.180 3.820 9 C -0.123 4.123 10 C 0.289 3.711 11 N -0.556 5.556 12 C -0.504 4.504 13 H 0.078 0.922 14 C 0.023 3.977 15 N -0.906 5.906 16 Si 0.953 3.047 17 H -0.256 1.256 18 H -0.293 1.293 19 H -0.278 1.278 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.135 0.865 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 8.929 3.432 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.145 4.145 7 C -0.077 4.077 8 C 0.176 3.824 9 C -0.181 4.181 10 C -0.026 4.026 11 N -0.235 5.235 12 C -0.543 4.543 13 H 0.096 0.904 14 C -0.178 4.178 15 N -0.543 5.543 16 Si 0.779 3.221 17 H -0.180 1.180 18 H -0.219 1.219 19 H -0.204 1.204 20 H 0.091 0.909 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.167 0.833 25 H 0.166 0.834 26 H 0.153 0.847 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.006 8.595 1.914 11.252 hybrid contribution -0.966 -0.674 0.855 1.455 sum 6.040 7.921 2.769 10.339 Atomic orbital electron populations 1.20803 0.92072 1.00777 1.02403 1.19943 0.96172 0.93302 0.99547 1.21250 0.95184 0.96941 1.01620 1.21412 0.93758 0.99049 1.00091 1.21403 1.00917 0.91813 1.00549 1.21403 0.92949 0.99788 1.00384 1.19866 0.94251 0.93658 0.99884 1.15138 0.91487 0.91553 0.84248 1.21751 0.97063 0.99220 1.00111 1.30204 0.91207 0.88471 0.92691 1.80807 1.13315 1.13254 1.16097 1.21136 1.17935 1.07037 1.08200 0.90378 1.25711 0.98725 0.95026 0.98345 1.69996 1.37527 1.10482 1.36312 0.85552 0.78142 0.78795 0.79643 1.17995 1.21932 1.20369 0.90872 0.94073 0.91559 0.84534 0.83284 0.83367 0.84726 0.91038 0.92552 0.94172 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.02 8.29 71.24 0.59 -3.43 16 2 C -0.09 -3.35 5.56 -19.87 -0.11 -3.46 16 3 C -0.13 -3.93 9.68 22.27 0.22 -3.72 16 4 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 5 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 6 C -0.13 -4.21 8.98 22.27 0.20 -4.01 16 7 C -0.08 -3.00 4.69 -19.87 -0.09 -3.10 16 8 C 0.18 8.29 0.46 -55.48 -0.03 8.26 16 9 C -0.12 -5.25 6.95 71.98 0.50 -4.75 16 10 C 0.29 14.99 9.72 89.44 0.87 15.86 16 11 N -0.56 -30.66 18.54 20.01 0.37 -30.29 16 12 C -0.50 -24.68 5.92 25.60 0.15 -24.53 16 13 H 0.08 3.73 6.50 -2.91 -0.02 3.71 16 14 C 0.02 1.18 5.13 84.65 0.43 1.62 16 15 N -0.91 -49.67 10.51 21.44 0.23 -49.45 16 16 Si 0.95 41.08 29.54 68.60 2.03 43.10 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H 0.07 2.82 6.96 -2.39 -0.02 2.81 16 21 H 0.04 1.88 5.01 -2.39 -0.01 1.87 16 22 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 23 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 24 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 25 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 26 H 0.13 4.06 5.92 -2.91 -0.02 4.04 16 27 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 28 H 0.06 2.73 6.44 -2.39 -0.02 2.71 16 29 H 0.04 1.54 7.46 -2.38 -0.02 1.52 16 30 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -60.53 251.77 6.95 -53.58 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.14 Total: 10.48 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 3.18 Total: -27.42 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: 0.60 Total: -79.74 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -60.53 6.95 -53.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.552 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds