Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47022 * 2 1 4 4 C 1.52995 * 109.46651 * 120.00116 * 2 1 3 5 5 H 1.08995 * 110.70646 * 56.68509 * 4 2 1 6 6 S 1.84582 * 110.94689 * 293.27858 * 4 2 1 7 7 C 1.83961 * 94.59575 * 207.17648 * 6 4 2 8 8 C 1.54259 * 102.75529 * 34.49260 * 7 6 4 9 9 H 1.09002 * 108.86948 * 214.70138 * 8 7 6 10 10 C 1.50700 * 108.87003 * 96.19425 * 8 7 6 11 11 H 1.08000 * 120.00211 * 241.45433 * 10 8 7 12 12 C 1.37872 * 119.99666 * 61.45446 * 10 8 7 13 13 N 1.31515 * 120.00304 * 0.02562 * 12 10 8 14 14 Si 1.86808 * 119.99866 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47224 * 59.99791 * 14 12 10 16 16 H 1.48492 * 109.47121 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46779 * 299.99612 * 14 12 10 18 18 C 1.52333 * 112.58419 * 335.37527 * 8 7 6 19 19 H 1.09005 * 108.86611 * 120.67958 * 18 8 7 20 20 N 1.46902 * 108.87047 * 239.17738 * 18 8 7 21 21 H 1.09000 * 109.47098 * 59.99982 * 1 2 3 22 22 H 1.08994 * 109.47551 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47015 * 300.00394 * 1 2 3 24 24 H 1.09001 * 109.46582 * 239.99720 * 2 1 3 25 25 H 1.08998 * 109.46714 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47294 * 299.99451 * 3 2 1 27 27 H 1.08992 * 109.47607 * 60.00099 * 3 2 1 28 28 H 1.09002 * 110.78708 * 276.12307 * 7 6 4 29 29 H 1.09002 * 110.78579 * 152.86261 * 7 6 4 30 30 H 0.96999 * 119.99830 * 180.02562 * 13 12 10 31 31 H 1.00896 * 111.00145 * 298.55480 * 20 18 8 32 32 H 1.00906 * 110.99565 * 62.50183 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6404 -1.7341 1.2995 6 16 1.6175 0.2255 2.7764 7 6 3.0341 -0.4278 3.7514 8 6 4.1414 -0.5740 2.6873 9 1 4.7484 -1.4468 2.9278 10 6 5.0167 0.6522 2.7232 11 1 5.0954 1.2853 1.8517 12 6 5.7172 0.9657 3.8685 13 7 5.6219 0.1945 4.9296 14 14 6.8018 2.4860 3.9133 15 1 5.9743 3.6922 3.6574 16 1 7.4418 2.5984 5.2486 17 1 7.8521 2.3756 2.8693 18 6 3.5821 -0.7390 1.2800 19 1 3.9545 0.0729 0.6552 20 7 4.0536 -2.0162 0.7281 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 2.7887 -1.3952 4.1897 29 1 3.3314 0.2810 4.5242 30 1 6.1145 0.4154 5.7355 31 1 5.0604 -2.0330 0.6646 32 1 3.7128 -2.7936 1.2737 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -35.593712 kcal Electronic energy + Delta-G solvation = -13269.948602 eV Core-core repulsion = 11161.981853 eV Total energy + Delta-G solvation = -2107.966749 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.08784 -36.25159 -34.37878 -31.61233 -28.46153 -28.05976 -27.23971 -24.42910 -21.47907 -20.57618 -18.59372 -17.31409 -16.90047 -16.37053 -15.81799 -15.54727 -14.87477 -14.53972 -14.23338 -13.98566 -13.26099 -13.04206 -12.86468 -12.81029 -12.67574 -12.41356 -12.30174 -12.10448 -11.74452 -11.62136 -11.41436 -11.04239 -10.68611 -10.34348 -9.50871 -8.38999 -8.17760 -6.28850 1.22777 1.38962 1.40897 1.47255 1.65930 2.39100 3.11693 3.68244 3.91387 4.01523 4.16138 4.38273 4.47632 4.57428 4.63112 4.77983 4.86942 4.92548 4.99960 5.12708 5.13922 5.24407 5.43399 5.53467 5.58838 5.62365 5.75557 6.13519 6.35226 6.62749 6.78893 7.38971 8.87836 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.010592 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.684722 B = 2642.753594 C = 2695.646728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.148 4.148 4 C 0.001 3.999 5 H 0.092 0.908 6 S -0.344 6.344 7 C -0.024 4.024 8 C 0.014 3.986 9 H 0.013 0.987 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.948 3.052 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.097 3.903 19 H 0.081 0.919 20 N -0.833 5.833 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.261 0.739 31 H 0.343 0.657 32 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -1.687 -8.144 10.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.205 4.205 4 C -0.128 4.128 5 H 0.110 0.890 6 S -0.119 6.119 7 C -0.172 4.172 8 C -0.008 4.008 9 H 0.031 0.969 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.184 4.184 13 N -0.556 5.556 14 Si 0.774 3.226 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.194 1.194 18 C -0.016 4.016 19 H 0.099 0.901 20 N -0.362 5.362 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.386 -0.717 -8.339 11.163 hybrid contribution 2.255 -0.149 1.502 2.714 sum -5.131 -0.866 -6.837 8.592 Atomic orbital electron populations 1.21816 0.93792 1.02194 1.01966 1.20940 0.96551 0.96043 0.95270 1.21937 1.00667 0.95984 1.01954 1.24050 0.96309 0.99509 0.92920 0.88981 1.87392 1.42038 1.66187 1.16236 1.24030 0.92782 1.00210 1.00223 1.19979 0.93070 0.96934 0.90774 0.96873 1.21440 1.25725 1.09558 0.98435 0.92799 1.25671 0.98024 0.99205 0.95543 1.70025 1.43014 1.39235 1.03346 0.85753 0.79240 0.80451 0.77152 1.20015 1.21231 1.19438 1.22217 0.92194 0.92896 0.94304 0.90061 1.59203 1.16306 1.03421 1.57233 0.90850 0.91981 0.93673 0.89014 0.93703 0.91246 0.92817 0.93173 0.90280 0.92961 0.84433 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.06 71.98 0.65 -2.84 16 2 C -0.07 -1.98 2.78 -10.79 -0.03 -2.01 16 3 C -0.15 -4.58 8.64 71.98 0.62 -3.96 16 4 C 0.00 0.03 2.75 31.02 0.09 0.11 16 5 H 0.09 3.00 7.97 -2.39 -0.02 2.99 16 6 S -0.34 -14.09 20.16 -56.49 -1.14 -15.23 16 7 C -0.02 -1.12 6.44 72.41 0.47 -0.65 16 8 C 0.01 0.66 2.29 -11.33 -0.03 0.63 16 9 H 0.01 0.68 7.78 -2.39 -0.02 0.66 16 10 C -0.51 -26.88 8.40 25.60 0.21 -26.67 16 11 H 0.05 2.82 7.20 -2.91 -0.02 2.80 16 12 C 0.01 0.79 5.03 84.65 0.43 1.21 16 13 N -0.92 -51.40 11.82 21.45 0.25 -51.15 16 14 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C 0.10 3.72 2.82 45.12 0.13 3.85 16 19 H 0.08 3.35 4.69 -2.38 -0.01 3.34 16 20 N -0.83 -27.25 8.94 -167.81 -1.50 -28.75 16 21 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.26 7.34 -2.38 -0.02 1.25 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.04 1.53 6.12 -2.39 -0.01 1.52 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.87 6.78 -2.39 -0.02 1.85 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 4.30 6.35 -2.39 -0.02 4.29 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 31 H 0.34 11.19 9.04 -89.70 -0.81 10.38 16 32 H 0.34 10.29 8.92 -89.69 -0.80 9.49 16 Total: -1.00 -55.81 261.19 1.69 -54.12 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.49 Total: 26.30 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 2.54 Total: -30.34 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -1.25 Total: -79.90 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -14.09 SS G_CDS: -1.14 Total: -15.23 kcal Total: -55.81 1.69 -54.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.528 kcal (2) G-P(sol) polarization free energy of solvation -55.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds