Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.31204 * 2 1 4 4 C 1.53095 * 109.39117 * 240.24577 * 2 1 3 5 5 S 1.81743 * 108.84441 * 176.82722 * 4 2 1 6 6 C 1.81748 * 102.21954 * 53.26553 * 5 4 2 7 7 C 1.53098 * 108.84330 * 306.73661 * 6 5 4 8 8 C 1.52580 * 109.38905 * 119.75473 * 2 1 3 9 9 C 1.50694 * 109.22723 * 70.49846 * 8 2 1 10 10 H 1.08005 * 120.00229 * 0.19745 * 9 8 2 11 11 C 1.37881 * 119.99805 * 180.19223 * 9 8 2 12 12 N 1.31507 * 120.00112 * 354.53408 * 11 9 8 13 13 Si 1.86807 * 119.99909 * 174.53193 * 11 9 8 14 14 H 1.48493 * 109.47124 * 59.99971 * 13 11 9 15 15 H 1.48492 * 109.47135 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46928 * 299.99994 * 13 11 9 17 17 C 1.53002 * 109.22631 * 311.14028 * 8 2 1 18 18 N 1.46899 * 109.47117 * 303.53839 * 17 8 2 19 19 H 1.09001 * 109.47134 * 300.24972 * 1 2 3 20 20 H 1.09007 * 109.46790 * 60.24501 * 1 2 3 21 21 H 1.08992 * 109.47271 * 180.24492 * 1 2 3 22 22 H 1.09001 * 109.57744 * 57.01848 * 4 2 1 23 23 H 1.09001 * 109.68669 * 296.70248 * 4 2 1 24 24 H 1.08996 * 109.57808 * 186.92631 * 6 5 4 25 25 H 1.09003 * 109.67922 * 66.60912 * 6 5 4 26 26 H 1.08998 * 109.38656 * 302.87736 * 7 6 5 27 27 H 1.09002 * 109.38825 * 183.17226 * 7 6 5 28 28 H 0.97009 * 120.00109 * 180.02562 * 12 11 9 29 29 H 1.09004 * 109.46584 * 63.53610 * 17 8 2 30 30 H 1.08996 * 109.47472 * 183.53492 * 17 8 2 31 31 H 1.00904 * 110.99942 * 173.69204 * 18 17 8 32 32 H 1.00896 * 110.99921 * 297.64258 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8905 1.0286 0.0000 4 6 2.0383 -0.7167 -1.2537 5 16 3.8532 -0.6259 -1.2867 6 6 4.3010 -1.2840 0.3472 7 6 3.5380 -0.5035 1.4208 8 6 2.0365 -0.7143 1.2495 9 6 1.7532 -2.1893 1.1272 10 1 1.2644 -2.5739 0.2442 11 6 2.1182 -3.0479 2.1424 12 7 2.8082 -2.5983 3.1676 13 14 1.6324 -4.8499 2.0615 14 1 2.2168 -5.4659 0.8433 15 1 2.1413 -5.5542 3.2657 16 1 0.1524 -4.9618 2.0116 17 6 1.3072 -0.1622 2.4760 18 7 1.4977 1.2927 2.5452 19 1 -0.3633 0.5177 0.8877 20 1 -0.3633 0.5101 -0.8922 21 1 -0.3633 -1.0276 0.0044 22 1 1.6322 -0.2319 -2.1415 23 1 1.7252 -1.7605 -1.2323 24 1 5.3733 -1.1699 0.5055 25 1 4.0338 -2.3393 0.4037 26 1 3.7673 0.5580 1.3279 27 1 3.8424 -0.8531 2.4073 28 1 3.0653 -3.2024 3.8817 29 1 0.2433 -0.3861 2.3973 30 1 1.7102 -0.6246 3.3770 31 1 0.9430 1.6952 3.2857 32 1 2.4732 1.5248 2.6571 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = -13.273559 kcal Electronic energy + Delta-G solvation = -13865.170729 eV Core-core repulsion = 11758.171855 eV Total energy + Delta-G solvation = -2106.998874 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.01434 -32.61818 -32.42948 -30.88837 -27.08547 -26.25006 -24.40923 -22.09073 -20.78201 -18.46568 -16.09310 -15.29765 -14.95102 -14.63602 -13.75346 -13.60965 -13.46590 -12.57346 -12.30359 -12.17774 -11.80234 -11.43104 -11.08298 -10.98315 -10.87324 -10.64636 -10.60031 -10.20143 -9.85943 -9.58748 -8.91023 -8.74565 -8.63870 -8.36959 -7.61988 -6.74742 -6.06534 -4.14981 2.90425 3.24100 3.29557 3.33345 3.58188 4.33760 5.15506 5.69013 5.85416 5.87828 6.10344 6.24030 6.31187 6.40020 6.59505 6.64570 6.68840 6.77050 6.98508 7.04858 7.16746 7.28606 7.31167 7.43014 7.62261 7.79608 7.99294 8.09881 8.31973 8.43399 8.85978 9.48881 10.92413 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.016008 C = 0.013446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.865678 B = 1748.699253 C = 2081.966992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 H 0.063 0.937 4 C -0.054 4.054 5 S -0.338 6.338 6 C -0.039 4.039 7 C -0.101 4.101 8 C 0.079 3.921 9 C -0.506 4.506 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.071 3.929 18 N -0.857 5.857 19 H 0.060 0.940 20 H 0.027 0.973 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.028 0.972 27 H 0.097 0.903 28 H 0.260 0.740 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.317 0.683 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 3.379 -1.867 3.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.202 4.202 5 S -0.111 6.111 6 C -0.186 4.186 7 C -0.140 4.140 8 C 0.078 3.922 9 C -0.545 4.545 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.523 5.523 13 Si 0.711 3.289 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.059 4.059 18 N -0.384 5.384 19 H 0.079 0.921 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.047 0.953 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.527 3.645 -3.269 4.925 hybrid contribution -0.624 -1.763 1.911 2.674 sum -1.151 1.882 -1.358 2.591 Atomic orbital electron populations 1.21762 0.96254 1.01031 0.99887 1.21063 0.94847 0.98302 0.94020 0.91890 1.23458 0.91232 1.04721 1.00784 1.86026 1.10509 1.86411 1.28153 1.23276 1.00070 1.04046 0.91250 1.21690 0.97409 0.95338 0.99597 1.17999 0.90858 0.93714 0.89641 1.21150 1.38476 0.91362 1.03484 0.92256 1.24904 0.94660 0.98193 0.95571 1.69811 1.37417 1.35065 1.10051 0.86787 0.79059 0.85578 0.77467 1.20258 1.21400 1.20324 1.22006 0.99202 0.84048 1.00628 1.59034 1.12677 1.14460 1.52243 0.92121 0.95373 0.92944 0.90876 0.89351 0.91414 0.88699 0.95348 0.88543 0.93003 0.93202 0.93064 0.87297 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.35 37.16 0.31 -2.15 16 2 C -0.06 -1.27 1.61 -90.79 -0.15 -1.41 16 3 H 0.06 1.33 7.77 -51.93 -0.40 0.93 16 4 C -0.05 -1.08 5.42 37.21 0.20 -0.88 16 5 S -0.34 -6.96 22.33 -107.50 -2.40 -9.36 16 6 C -0.04 -0.84 6.15 37.21 0.23 -0.61 16 7 C -0.10 -2.22 3.74 -26.89 -0.10 -2.32 16 8 C 0.08 1.72 0.12 -156.09 -0.02 1.71 16 9 C -0.51 -12.23 5.03 -34.44 -0.17 -12.41 16 10 H 0.06 1.47 5.66 -52.48 -0.30 1.17 16 11 C 0.07 1.70 4.73 -17.82 -0.08 1.61 16 12 N -0.89 -22.39 9.49 55.43 0.53 -21.87 16 13 Si 0.88 20.04 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.07 1.52 4.63 -3.82 -0.02 1.50 16 18 N -0.86 -15.54 8.61 -10.37 -0.09 -15.63 16 19 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 20 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 21 H 0.05 1.03 7.32 -51.93 -0.38 0.65 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.09 1.87 5.95 -51.93 -0.31 1.56 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.09 2.25 6.55 -51.93 -0.34 1.91 16 26 H 0.03 0.60 7.25 -51.93 -0.38 0.22 16 27 H 0.10 2.32 6.09 -51.93 -0.32 2.01 16 28 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.05 1.10 6.50 -51.93 -0.34 0.76 16 30 H 0.05 1.23 6.36 -51.93 -0.33 0.90 16 31 H 0.32 5.07 9.08 -39.29 -0.36 4.71 16 32 H 0.33 5.89 7.72 -39.29 -0.30 5.59 16 LS Contribution 246.21 15.07 3.71 3.71 Total: -1.00 -24.34 246.21 -7.55 -31.89 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.47 Total: 11.20 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 0.20 Total: -14.96 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.44 Total: -37.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -2.40 Total: -9.36 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -24.34 -7.55 -31.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.618 kcal (2) G-P(sol) polarization free energy of solvation -24.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds