Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 116.99531 * 2 1 4 4 O 1.21517 * 120.00303 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00103 * 179.97438 * 3 2 1 6 6 C 1.47579 * 134.49439 * 180.02562 * 5 3 2 7 7 C 1.53950 * 86.11621 * 204.63969 * 6 5 3 8 8 C 1.53004 * 113.73988 * 221.94050 * 7 6 5 9 9 O 1.42901 * 109.46860 * 183.07539 * 8 7 6 10 10 C 1.34921 * 117.00094 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99879 * 359.97438 * 10 9 8 12 12 C 1.38634 * 120.00450 * 179.97438 * 10 9 8 13 13 N 1.31583 * 119.99735 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00123 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47548 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46919 * 120.00523 * 14 12 10 17 17 H 1.48500 * 109.47271 * 240.00291 * 14 12 10 18 18 C 1.47925 * 134.49772 * 0.02562 * 5 3 2 19 19 H 1.08998 * 109.47085 * 299.99785 * 1 2 3 20 20 H 1.08995 * 109.47099 * 60.00326 * 1 2 3 21 21 H 1.09000 * 109.46445 * 179.97438 * 1 2 3 22 22 H 1.09003 * 113.77049 * 90.34034 * 6 5 3 23 23 H 1.08993 * 113.77081 * 318.93795 * 6 5 3 24 24 H 1.09002 * 113.74276 * 90.74001 * 7 6 5 25 25 H 1.08998 * 109.46823 * 303.07465 * 8 7 6 26 26 H 1.08998 * 109.46745 * 63.07477 * 8 7 6 27 27 H 0.97001 * 119.99814 * 179.97438 * 13 12 10 28 28 H 1.09006 * 113.87423 * 41.10256 * 18 5 3 29 29 H 1.08997 * 113.77410 * 269.60428 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.3868 2.3758 0.0012 7 6 5.3638 1.3730 -0.6391 8 6 6.7833 1.4491 -0.0733 9 8 7.6263 0.5350 -0.7774 10 6 8.9198 0.4780 -0.3980 11 1 9.2753 1.1070 0.4048 12 6 9.7927 -0.3877 -1.0387 13 7 9.3598 -1.1536 -2.0171 14 14 11.5837 -0.4660 -0.5138 15 1 11.8154 0.4885 0.5999 16 1 11.9070 -1.8427 -0.0605 17 1 12.4526 -0.1065 -1.6632 18 6 4.4998 0.2710 0.0007 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 4.6819 2.7008 0.9989 23 1 4.1147 3.2033 -0.6540 24 1 5.3401 1.3720 -1.7288 25 1 7.1675 2.4623 -0.1912 26 1 6.7672 1.1874 0.9847 27 1 9.9706 -1.7591 -2.4656 28 1 4.3179 -0.5807 -0.6549 29 1 4.8280 -0.0210 0.9982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -99.453720 kcal Electronic energy + Delta-G solvation = -14109.667069 eV Core-core repulsion = 11420.345177 eV Total energy + Delta-G solvation = -2689.321892 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72076 -40.06880 -37.96191 -37.24674 -33.92452 -31.92044 -28.73229 -27.27267 -27.14946 -25.73428 -22.24369 -20.92032 -19.53417 -19.03979 -18.20013 -17.84983 -17.34431 -16.42755 -15.87781 -15.69170 -15.24544 -14.71372 -14.48404 -14.07058 -13.66361 -13.54305 -13.17491 -12.97462 -12.73348 -12.29292 -12.10842 -11.97071 -11.84702 -11.66824 -11.31550 -11.11415 -10.09457 -9.94918 -8.13029 -5.81742 0.94747 1.45004 1.49448 1.60150 1.62144 2.36524 2.75717 3.19742 3.28407 3.71469 3.92565 4.26528 4.32433 4.33330 4.41359 4.50795 4.52846 4.57128 4.63589 4.73154 4.87198 4.91897 5.22545 5.25427 5.33440 6.25727 6.48088 7.07274 7.30957 8.11022 9.11825 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.074951 B = 0.005264 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.486194 B = 5317.590744 C = 5547.273236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.664 3.336 4 O -0.609 6.609 5 N -0.636 5.636 6 C 0.148 3.852 7 C -0.110 4.110 8 C 0.079 3.921 9 O -0.336 6.336 10 C -0.372 4.372 11 H 0.076 0.924 12 C -0.043 4.043 13 N -0.939 5.939 14 Si 1.002 2.998 15 H -0.256 1.256 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.121 3.879 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.136 0.864 22 H 0.113 0.887 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.259 0.741 28 H 0.083 0.917 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 3.114 5.744 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.291 6.291 3 C 0.421 3.579 4 O -0.502 6.502 5 N -0.378 5.378 6 C 0.028 3.972 7 C -0.129 4.129 8 C 0.001 3.999 9 O -0.252 6.252 10 C -0.451 4.451 11 H 0.094 0.906 12 C -0.236 4.236 13 N -0.584 5.584 14 Si 0.825 3.175 15 H -0.179 1.179 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.001 4.001 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.154 0.846 22 H 0.131 0.869 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.038 3.155 5.508 13.609 hybrid contribution 0.552 -0.007 0.137 0.569 sum -11.486 3.148 5.645 13.180 Atomic orbital electron populations 1.23528 0.72596 1.05691 1.02666 1.86288 1.25978 1.30101 1.86737 1.17748 0.82031 0.82235 0.75921 1.90939 1.64483 1.36133 1.58629 1.48932 1.00451 1.13574 1.74832 1.23319 0.80829 0.90469 1.02587 1.22933 0.92341 0.96266 1.01374 1.22241 0.89213 0.93382 0.95050 1.85562 1.19796 1.60303 1.59497 1.21347 0.84422 1.22094 1.17192 0.90599 1.26173 1.03903 0.96579 0.96981 1.70196 1.36582 1.26434 1.25188 0.84731 0.76341 0.78279 0.78133 1.17943 1.20431 1.20532 1.23471 0.81085 0.93567 1.01975 0.91759 0.92024 0.84574 0.86871 0.88529 0.88572 0.94062 0.93824 0.93220 0.89836 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 10.56 113.37 1.20 2.14 15 2 O -0.38 -10.73 10.56 -55.45 -0.59 -11.31 15 3 C 0.66 21.72 8.92 129.79 1.16 22.88 15 4 O -0.61 -22.57 16.86 19.79 0.33 -22.24 15 5 N -0.64 -19.27 3.62 -966.05 -3.49 -22.77 15 6 C 0.15 3.85 8.40 86.49 0.73 4.58 15 7 C -0.11 -3.50 4.19 -10.13 -0.04 -3.55 15 8 C 0.08 3.03 5.86 71.98 0.42 3.45 15 9 O -0.34 -18.25 9.78 -81.90 -0.80 -19.06 15 10 C -0.37 -20.92 9.89 67.91 0.67 -20.25 15 11 H 0.08 3.93 7.77 -2.91 -0.02 3.91 15 12 C -0.04 -2.48 5.49 84.82 0.47 -2.01 15 13 N -0.94 -58.37 13.67 21.61 0.30 -58.07 15 14 Si 1.00 43.77 29.55 68.60 2.03 45.80 15 15 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 18 C 0.12 3.62 8.45 86.42 0.73 4.35 15 19 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.06 1.18 8.14 -2.39 -0.02 1.17 15 21 H 0.14 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.11 2.43 8.10 -2.39 -0.02 2.41 15 23 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.10 3.34 8.14 -2.39 -0.02 3.32 15 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 26 H 0.04 1.55 7.88 -2.39 -0.02 1.54 15 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 28 H 0.08 2.58 8.14 -2.38 -0.02 2.57 15 29 H 0.10 2.83 7.92 -2.39 -0.02 2.82 15 Total: -1.00 -73.71 264.08 4.24 -69.47 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.13 Total: 6.59 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.33 Total: 11.59 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -3.20 Total: -80.84 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -1.05 Total: -52.61 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.71 4.24 -69.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.985 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds