Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38944 * 119.70039 * 2 1 4 4 C 1.37959 * 120.69620 * 179.97438 * 3 2 1 5 5 C 1.38935 * 119.89349 * 359.97438 * 4 3 2 6 6 N 1.38036 * 132.79229 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.60475 * 359.97438 * 6 5 4 8 8 C 1.38325 * 108.79156 * 179.26132 * 6 5 4 9 9 C 1.39920 * 125.69941 * 180.13082 * 8 6 5 10 10 H 1.08001 * 120.00240 * 180.59346 * 9 8 6 11 11 C 1.40197 * 119.99803 * 0.60145 * 9 8 6 12 12 N 1.30749 * 120.00000 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47515 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46972 * 120.00001 * 13 11 9 16 16 H 1.48497 * 109.47285 * 239.99840 * 13 11 9 17 17 C 1.39126 * 108.60666 * 0.64869 * 8 6 5 18 18 C 1.40933 * 107.49240 * 359.44884 * 17 8 6 19 19 C 1.36427 * 119.70597 * 179.97438 * 2 1 3 20 20 C 1.50706 * 120.09662 * 0.02562 * 19 2 1 21 21 H 1.08997 * 109.47110 * 270.01995 * 1 2 3 22 22 H 1.09007 * 109.47315 * 30.02441 * 1 2 3 23 23 H 1.09006 * 109.47231 * 150.02056 * 1 2 3 24 24 H 1.08000 * 119.65396 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.04978 * 179.97438 * 4 3 2 26 26 H 0.96999 * 119.99951 * 179.97438 * 12 11 9 27 27 H 1.07998 * 126.25632 * 179.47630 * 17 8 6 28 28 H 1.09001 * 109.46953 * 90.00171 * 20 19 2 29 29 H 1.09000 * 109.47318 * 209.99769 * 20 19 2 30 30 H 1.09000 * 109.47161 * 330.00400 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2069 0.0000 4 6 3.5748 1.2309 0.0005 5 6 4.2881 0.0386 0.0016 6 7 5.6387 -0.2461 0.0028 7 1 6.3540 0.4091 0.0027 8 6 5.8047 -1.6193 0.0204 9 6 7.0307 -2.2935 0.0295 10 1 7.0532 -3.3733 0.0336 11 6 8.2299 -1.5674 0.0334 12 7 8.2027 -0.2602 0.0281 13 14 9.8667 -2.4675 0.0463 14 1 9.6258 -3.9328 0.0501 15 1 10.6446 -2.0973 -1.1634 16 1 10.6309 -2.0878 1.2616 17 6 4.5489 -2.2182 0.0157 18 6 3.5879 -1.1874 0.0075 19 6 2.1831 -1.1850 0.0005 20 6 1.4250 -2.4875 0.0005 21 1 -0.3633 0.0004 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6449 2.1361 -0.0004 25 1 4.0993 2.1750 0.0001 26 1 9.0325 0.2422 0.0312 27 1 4.3474 -3.2792 0.0182 28 1 1.2427 -2.8018 -1.0272 29 1 2.0113 -3.2491 0.5147 30 1 0.4728 -2.3538 0.5139 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = 4.943311 kcal Electronic energy + Delta-G solvation = -13684.464595 eV Core-core repulsion = 11442.811712 eV Total energy + Delta-G solvation = -2241.652883 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52923 -38.26588 -35.44451 -33.73013 -31.77181 -30.68628 -28.83379 -26.38850 -26.25087 -22.48705 -21.38014 -20.62153 -19.54194 -17.73848 -16.63427 -16.12351 -15.74574 -15.20628 -14.99416 -14.16402 -14.06632 -14.00310 -13.47385 -13.36683 -13.11142 -13.03029 -13.01446 -12.70728 -12.50272 -11.98820 -11.77261 -11.71407 -11.30312 -11.11253 -10.13266 -8.95180 -8.86852 -8.22345 -6.41899 0.54550 1.11583 1.34350 1.37088 1.54746 2.09186 2.13488 3.02915 3.19574 3.35611 4.15456 4.28068 4.53311 4.58193 4.73273 4.79872 4.92283 5.00763 5.02660 5.05020 5.15684 5.21873 5.31624 5.38295 5.57538 5.62859 5.76835 5.95508 6.00511 6.19936 6.43741 6.58862 6.79016 6.99506 7.56515 8.12296 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059114 B = 0.007718 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.546328 B = 3627.191778 C = 4080.271037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.116 4.116 3 C -0.158 4.158 4 C -0.134 4.134 5 C 0.001 3.999 6 N -0.596 5.596 7 H 0.419 0.581 8 C 0.256 3.744 9 C -0.475 4.475 10 H 0.101 0.899 11 C 0.030 3.970 12 N -0.855 5.855 13 Si 1.013 2.987 14 H -0.254 1.254 15 H -0.263 1.263 16 H -0.263 1.263 17 C -0.405 4.405 18 C -0.066 4.066 19 C -0.120 4.120 20 C -0.092 4.092 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.138 0.862 25 H 0.113 0.887 26 H 0.302 0.698 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 0.679 -0.001 5.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.177 4.177 4 C -0.156 4.156 5 C -0.104 4.104 6 N -0.211 5.211 7 H 0.267 0.733 8 C 0.145 3.855 9 C -0.508 4.508 10 H 0.119 0.881 11 C -0.183 4.183 12 N -0.486 5.486 13 Si 0.832 3.168 14 H -0.177 1.177 15 H -0.187 1.187 16 H -0.187 1.187 17 C -0.427 4.427 18 C -0.070 4.070 19 C -0.120 4.120 20 C -0.149 4.149 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.097 0.981 -0.011 5.191 hybrid contribution 1.364 0.130 0.010 1.370 sum -3.733 1.112 -0.001 3.895 Atomic orbital electron populations 1.20699 0.89263 1.02996 1.02373 1.19437 0.97081 0.91825 1.03370 1.20658 0.92076 0.97979 1.06998 1.20123 0.94709 0.94089 1.06632 1.18953 0.84879 0.96138 1.10424 1.43142 1.05087 1.07552 1.65360 0.73311 1.18518 0.94617 0.81571 0.90829 1.19411 0.89084 0.95856 1.46482 0.88119 1.27110 1.05819 0.95490 0.89893 1.68772 1.32602 1.08595 1.38587 0.84670 0.73963 0.79131 0.79042 1.17739 1.18729 1.18719 1.20571 0.90807 0.96578 1.34781 1.18336 0.93467 0.92822 1.02412 1.19264 0.90794 0.96372 1.05597 1.20570 0.99257 0.93414 1.01635 0.90978 0.90829 0.91115 0.84378 0.86897 0.88640 0.86934 0.91717 0.93444 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 9.15 71.24 0.65 -1.91 16 2 C -0.12 -4.35 5.84 -20.12 -0.12 -4.46 16 3 C -0.16 -6.03 9.67 22.37 0.22 -5.82 16 4 C -0.13 -5.94 10.07 22.37 0.23 -5.72 16 5 C 0.00 0.07 7.24 39.06 0.28 0.36 16 6 N -0.60 -32.67 5.84 -180.16 -1.05 -33.73 16 7 H 0.42 22.46 6.18 -92.71 -0.57 21.89 16 8 C 0.26 14.53 6.67 38.74 0.26 14.79 16 9 C -0.48 -25.38 9.31 23.15 0.22 -25.16 16 10 H 0.10 5.11 7.85 -2.91 -0.02 5.09 16 11 C 0.03 1.42 5.50 85.33 0.47 1.89 16 12 N -0.86 -41.96 10.61 21.87 0.23 -41.73 16 13 Si 1.01 36.26 29.56 68.60 2.03 38.28 16 14 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 15 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 17 C -0.40 -22.20 10.44 23.14 0.24 -21.96 16 18 C -0.07 -3.40 5.97 -21.35 -0.13 -3.52 16 19 C -0.12 -5.15 5.90 -19.74 -0.12 -5.27 16 20 C -0.09 -3.20 9.07 71.24 0.65 -2.55 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 23 H 0.07 1.70 6.64 -2.38 -0.02 1.69 16 24 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 25 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 26 H 0.30 13.11 8.29 -92.71 -0.77 12.34 16 27 H 0.11 5.86 8.02 -2.91 -0.02 5.84 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.72 7.79 -2.39 -0.02 1.70 16 30 H 0.08 2.33 6.65 -2.39 -0.02 2.31 16 Total: -1.00 -60.98 254.07 4.63 -56.35 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: 0.58 Total: 40.16 kcal Atomic # 6 Polarization: -62.18 SS G_CDS: 2.85 Total: -59.33 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -0.82 Total: -75.46 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.28 kcal Total: -60.98 4.63 -56.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.289 kcal (2) G-P(sol) polarization free energy of solvation -60.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds