Wall clock time and date at job start Mon Mar 30 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47203 * 2 1 4 4 C 1.34729 * 125.14806 * 85.02519 * 3 2 1 5 5 C 1.41589 * 107.93021 * 179.97438 * 4 3 2 6 6 C 1.40514 * 133.31785 * 180.02562 * 5 4 3 7 7 C 1.35721 * 120.15313 * 179.97438 * 6 5 4 8 8 C 1.41252 * 120.34133 * 0.27385 * 7 6 5 9 9 C 1.41021 * 119.97364 * 179.72229 * 8 7 6 10 10 H 1.07993 * 120.00115 * 329.96918 * 9 8 7 11 11 C 1.39892 * 119.99833 * 149.97070 * 9 8 7 12 12 N 1.30873 * 119.99951 * 161.63500 * 11 9 8 13 13 Si 1.86801 * 120.00161 * 341.63542 * 11 9 8 14 14 H 1.48501 * 109.47390 * 95.42308 * 13 11 9 15 15 H 1.48493 * 109.47061 * 215.42599 * 13 11 9 16 16 H 1.48503 * 109.47075 * 335.42374 * 13 11 9 17 17 C 1.40597 * 120.05538 * 359.45109 * 8 7 6 18 18 C 1.38207 * 119.57700 * 0.54359 * 17 8 7 19 19 N 1.36641 * 125.15149 * 265.00926 * 3 2 1 20 20 H 0.97006 * 125.58999 * 0.03328 * 19 3 2 21 21 H 1.08994 * 109.47504 * 59.99404 * 1 2 3 22 22 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46879 * 299.99399 * 1 2 3 24 24 H 1.09004 * 109.47372 * 240.00584 * 2 1 3 25 25 H 1.08996 * 109.48049 * 120.00067 * 2 1 3 26 26 H 1.08004 * 126.03399 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.92453 * 0.02562 * 6 5 4 28 28 H 1.08006 * 119.83190 * 179.97438 * 7 6 5 29 29 H 0.96996 * 120.00384 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.21361 * 180.24918 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2008 2.1840 1.0975 5 6 2.6865 3.4467 0.6800 6 6 3.0385 4.6199 1.3686 7 6 3.4858 5.7036 0.6849 8 6 3.5958 5.6637 -0.7228 9 6 4.0560 6.7961 -1.4260 10 1 3.8717 7.7859 -1.0354 11 6 4.7510 6.6373 -2.6296 12 7 4.8647 7.6446 -3.4574 13 14 5.5170 4.9876 -3.0552 14 1 4.5833 4.2149 -3.9134 15 1 6.7922 5.2072 -3.7836 16 1 5.7844 4.2292 -1.8067 17 6 3.2523 4.4939 -1.4230 18 6 2.7968 3.3906 -0.7262 19 7 2.3862 2.1302 -1.1130 20 1 2.3542 1.8021 -2.0253 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.0015 1.8849 2.1160 27 1 2.9536 4.6591 2.4446 28 1 3.7545 6.6028 1.2194 29 1 5.3470 7.5347 -4.2917 30 1 3.3392 4.4592 -2.4990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:49 Heat of formation + Delta-G solvation = 32.819240 kcal Electronic energy + Delta-G solvation = -13637.809871 eV Core-core repulsion = 11397.365779 eV Total energy + Delta-G solvation = -2240.444092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31656 -36.35316 -33.57534 -32.80344 -31.00826 -28.41776 -28.27675 -24.85680 -23.01242 -21.11617 -20.15183 -19.43201 -17.28859 -16.56554 -15.33454 -14.89275 -14.10235 -13.83573 -13.53427 -13.26182 -12.90805 -12.70347 -12.42856 -12.11961 -11.62161 -11.39754 -11.07621 -10.85407 -10.74430 -10.43880 -10.06706 -10.04088 -9.53870 -9.09243 -8.53932 -7.13181 -6.93736 -6.73212 -4.39527 2.26409 2.84485 3.12113 3.26562 3.34472 3.61450 3.98688 4.02868 4.61016 5.12615 5.19653 5.47055 5.48863 5.77375 5.87310 5.89809 6.01554 6.19815 6.28420 6.44808 6.53233 6.62243 6.82397 7.00819 7.15409 7.20907 7.66752 7.73049 7.91076 7.93116 8.16831 8.39804 8.47173 8.72958 8.83895 10.08386 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.009083 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.924249 B = 3081.816071 C = 3522.025439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.010 3.990 4 C -0.174 4.174 5 C -0.201 4.201 6 C -0.058 4.058 7 C -0.188 4.188 8 C 0.111 3.889 9 C -0.440 4.440 10 H 0.092 0.908 11 C 0.084 3.916 12 N -0.809 5.809 13 Si 0.918 3.082 14 H -0.276 1.276 15 H -0.295 1.295 16 H -0.244 1.244 17 C -0.287 4.287 18 C 0.150 3.850 19 N -0.602 5.602 20 H 0.402 0.598 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.284 0.716 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -11.090 3.518 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.096 4.096 4 C -0.200 4.200 5 C -0.204 4.204 6 C -0.077 4.077 7 C -0.207 4.207 8 C 0.107 3.893 9 C -0.469 4.469 10 H 0.110 0.890 11 C -0.134 4.134 12 N -0.434 5.434 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.223 1.223 16 H -0.167 1.167 17 C -0.310 4.310 18 C 0.044 3.956 19 N -0.206 5.206 20 H 0.237 0.763 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.650 -10.987 3.222 12.017 hybrid contribution 0.352 -0.698 -0.889 1.184 sum -3.298 -11.685 2.333 12.364 Atomic orbital electron populations 1.21769 0.95218 1.00922 1.02399 1.19990 0.95576 0.91017 1.02262 1.19863 1.08694 0.94506 0.86558 1.20163 1.09351 0.94011 0.96444 1.17816 1.14610 0.95656 0.92345 1.19949 0.98137 0.92211 0.97407 1.20762 1.07791 0.98082 0.94109 1.17388 0.89345 0.91259 0.91332 1.19415 1.30018 0.94552 1.02934 0.88971 1.26170 0.94499 0.98554 0.94216 1.69726 1.32154 1.33362 1.08123 0.86179 0.77356 0.81947 0.79979 1.20293 1.22253 1.16735 1.19704 1.19650 0.94393 0.97300 1.18139 0.98629 0.84978 0.93865 1.41665 1.59837 1.11724 1.07396 0.76340 0.92962 0.92893 0.92235 0.92088 0.90447 0.86000 0.88472 0.87800 0.90529 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.05 -0.64 6.45 -27.88 -0.18 -0.82 16 3 C 0.01 0.17 6.35 -81.69 -0.52 -0.35 16 4 C -0.17 -3.35 10.72 -39.55 -0.42 -3.77 16 5 C -0.20 -4.53 6.19 -106.65 -0.66 -5.19 16 6 C -0.06 -1.28 10.03 -39.63 -0.40 -1.68 16 7 C -0.19 -4.45 9.69 -39.34 -0.38 -4.83 16 8 C 0.11 2.88 5.11 -106.81 -0.55 2.34 16 9 C -0.44 -12.03 9.54 -37.91 -0.36 -12.40 16 10 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 11 C 0.08 2.24 5.39 -17.34 -0.09 2.15 16 12 N -0.81 -21.78 13.93 55.54 0.77 -21.01 16 13 Si 0.92 21.58 24.51 -169.99 -4.17 17.42 16 14 H -0.28 -6.33 6.70 56.52 0.38 -5.96 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.24 -5.98 6.87 56.52 0.39 -5.59 16 17 C -0.29 -7.24 7.17 -38.70 -0.28 -7.51 16 18 C 0.15 3.51 7.24 -83.94 -0.61 2.90 16 19 N -0.60 -11.66 6.15 -6.89 -0.04 -11.70 16 20 H 0.40 6.65 8.96 -40.82 -0.37 6.28 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 27 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 28 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 29 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 30 H 0.10 2.43 4.71 -52.49 -0.25 2.18 16 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -29.06 253.96 -7.28 -36.33 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.59 Total: 5.58 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -4.08 Total: -30.45 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.73 Total: -32.71 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.17 Total: 17.42 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.06 -7.28 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.153 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds