Wall clock time and date at job start Mon Mar 30 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47203 * 2 1 4 4 C 1.34729 * 125.14806 * 85.02519 * 3 2 1 5 5 C 1.41589 * 107.93021 * 179.97438 * 4 3 2 6 6 C 1.40514 * 133.31785 * 180.02562 * 5 4 3 7 7 C 1.35721 * 120.15313 * 179.97438 * 6 5 4 8 8 C 1.41252 * 120.34133 * 0.27385 * 7 6 5 9 9 C 1.41021 * 119.97364 * 179.72229 * 8 7 6 10 10 H 1.07993 * 120.00115 * 329.96918 * 9 8 7 11 11 C 1.39892 * 119.99833 * 149.97070 * 9 8 7 12 12 N 1.30873 * 119.99951 * 161.63500 * 11 9 8 13 13 Si 1.86801 * 120.00161 * 341.63542 * 11 9 8 14 14 H 1.48501 * 109.47390 * 95.42308 * 13 11 9 15 15 H 1.48493 * 109.47061 * 215.42599 * 13 11 9 16 16 H 1.48503 * 109.47075 * 335.42374 * 13 11 9 17 17 C 1.40597 * 120.05538 * 359.45109 * 8 7 6 18 18 C 1.38207 * 119.57700 * 0.54359 * 17 8 7 19 19 N 1.36641 * 125.15149 * 265.00926 * 3 2 1 20 20 H 0.97006 * 125.58999 * 0.03328 * 19 3 2 21 21 H 1.08994 * 109.47504 * 59.99404 * 1 2 3 22 22 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46879 * 299.99399 * 1 2 3 24 24 H 1.09004 * 109.47372 * 240.00584 * 2 1 3 25 25 H 1.08996 * 109.48049 * 120.00067 * 2 1 3 26 26 H 1.08004 * 126.03399 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.92453 * 0.02562 * 6 5 4 28 28 H 1.08006 * 119.83190 * 179.97438 * 7 6 5 29 29 H 0.96996 * 120.00384 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.21361 * 180.24918 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2008 2.1840 1.0975 5 6 2.6865 3.4467 0.6800 6 6 3.0385 4.6199 1.3686 7 6 3.4858 5.7036 0.6849 8 6 3.5958 5.6637 -0.7228 9 6 4.0560 6.7961 -1.4260 10 1 3.8717 7.7859 -1.0354 11 6 4.7510 6.6373 -2.6296 12 7 4.8647 7.6446 -3.4574 13 14 5.5170 4.9876 -3.0552 14 1 4.5833 4.2149 -3.9134 15 1 6.7922 5.2072 -3.7836 16 1 5.7844 4.2292 -1.8067 17 6 3.2523 4.4939 -1.4230 18 6 2.7968 3.3906 -0.7262 19 7 2.3862 2.1302 -1.1130 20 1 2.3542 1.8021 -2.0253 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.0015 1.8849 2.1160 27 1 2.9536 4.6591 2.4446 28 1 3.7545 6.6028 1.2194 29 1 5.3470 7.5347 -4.2917 30 1 3.3392 4.4592 -2.4990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:49 Heat of formation + Delta-G solvation = 15.461676 kcal Electronic energy + Delta-G solvation = -13638.562552 eV Core-core repulsion = 11397.365779 eV Total energy + Delta-G solvation = -2241.196772 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.95732 -38.11764 -35.35341 -34.10977 -32.77564 -30.11172 -29.97626 -26.45530 -24.47728 -22.74685 -21.96042 -20.92883 -19.19129 -18.24935 -17.00043 -16.68322 -15.55545 -15.31143 -15.10055 -14.91001 -14.55171 -14.32765 -13.95885 -13.58698 -13.06724 -13.04102 -12.66497 -12.34484 -12.14404 -12.02299 -11.86615 -11.73154 -11.43024 -10.97214 -10.27375 -8.92765 -8.89268 -8.43481 -6.40076 0.53117 0.98980 1.21186 1.39482 1.45310 1.97686 2.12868 2.45847 2.70413 3.55879 3.97289 4.13372 4.29664 4.52105 4.57343 4.72153 4.76515 4.81500 4.86066 5.01795 5.08539 5.13916 5.23034 5.38705 5.42637 5.49986 5.84144 5.91220 6.09231 6.22177 6.29116 6.46297 6.77733 6.86624 6.99108 8.17251 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.009083 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.924249 B = 3081.816071 C = 3522.025439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.040 3.960 4 C -0.201 4.201 5 C -0.204 4.204 6 C -0.056 4.056 7 C -0.206 4.206 8 C 0.087 3.913 9 C -0.477 4.477 10 H 0.063 0.937 11 C 0.050 3.950 12 N -0.849 5.849 13 Si 0.971 3.029 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.261 1.261 17 C -0.289 4.289 18 C 0.117 3.883 19 N -0.596 5.596 20 H 0.415 0.585 21 H 0.041 0.959 22 H 0.081 0.919 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.293 0.707 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 -14.894 4.473 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.067 4.067 4 C -0.225 4.225 5 C -0.208 4.208 6 C -0.075 4.075 7 C -0.226 4.226 8 C 0.084 3.916 9 C -0.507 4.507 10 H 0.081 0.919 11 C -0.164 4.164 12 N -0.476 5.476 13 Si 0.796 3.204 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.185 1.185 17 C -0.313 4.313 18 C 0.009 3.991 19 N -0.200 5.200 20 H 0.252 0.748 21 H 0.060 0.940 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.539 -14.796 4.157 16.025 hybrid contribution 0.453 0.233 -1.026 1.145 sum -4.086 -14.563 3.131 15.446 Atomic orbital electron populations 1.21742 0.93912 1.02673 1.01709 1.20217 0.96473 0.87676 1.04396 1.20761 1.04572 0.96098 0.85229 1.20513 1.10661 0.92790 0.98576 1.18377 1.13164 0.96983 0.92271 1.20307 0.96628 0.91349 0.99185 1.20924 1.08820 0.99370 0.93465 1.17552 0.90192 0.91338 0.92559 1.19384 1.32908 0.93923 1.04520 0.91924 1.26743 0.94534 1.01199 0.93930 1.69744 1.33975 1.34832 1.09026 0.85380 0.77400 0.78564 0.79072 1.19315 1.20479 1.18532 1.19746 1.19401 0.95000 0.97111 1.18229 1.00062 0.86204 0.94575 1.41817 1.58721 1.10565 1.08917 0.74755 0.93991 0.90018 0.92660 0.90232 0.88105 0.83055 0.84989 0.87038 0.89674 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.84 16 2 C -0.05 -0.99 6.45 29.85 0.19 -0.80 16 3 C 0.04 1.25 6.35 41.01 0.26 1.51 16 4 C -0.20 -6.93 10.72 22.29 0.24 -6.70 16 5 C -0.20 -8.76 6.19 -21.18 -0.13 -8.89 16 6 C -0.06 -2.39 10.03 22.24 0.22 -2.17 16 7 C -0.21 -9.91 9.69 22.43 0.22 -9.69 16 8 C 0.09 4.68 5.11 -21.28 -0.11 4.57 16 9 C -0.48 -27.62 9.54 23.35 0.22 -27.40 16 10 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 11 C 0.05 2.79 5.39 85.24 0.46 3.25 16 12 N -0.85 -47.66 13.93 21.82 0.30 -47.36 16 13 Si 0.97 45.39 24.51 68.60 1.68 47.07 16 14 H -0.27 -11.91 6.70 99.48 0.67 -11.24 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.26 -12.78 6.87 99.48 0.68 -12.09 16 17 C -0.29 -14.71 7.17 22.84 0.16 -14.55 16 18 C 0.12 5.30 7.24 38.87 0.28 5.58 16 19 N -0.60 -21.32 6.15 -175.70 -1.08 -22.41 16 20 H 0.42 12.49 8.96 -92.70 -0.83 11.66 16 21 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 30 H 0.09 4.55 4.71 -2.91 -0.01 4.54 16 Total: -1.00 -64.70 253.96 3.89 -60.81 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.25 Total: 19.01 kcal Atomic # 6 Polarization: -59.86 SS G_CDS: 2.73 Total: -57.12 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.78 Total: -69.76 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.68 Total: 47.07 kcal Total: -64.70 3.89 -60.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.273 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds