Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.50699 * 109.46780 * 119.99538 * 2 1 3 5 5 H 1.08004 * 120.00173 * 120.17594 * 4 2 1 6 6 C 1.37879 * 120.00418 * 299.90413 * 4 2 1 7 7 N 1.31517 * 119.99509 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47089 * 119.99764 * 8 6 4 11 11 H 1.48503 * 109.47220 * 239.99429 * 8 6 4 12 12 C 1.50695 * 109.47516 * 239.99543 * 2 1 3 13 13 C 1.38359 * 119.85162 * 183.35334 * 12 2 1 14 14 C 1.37948 * 120.15628 * 179.76432 * 13 12 2 15 15 C 1.39630 * 119.84026 * 0.53530 * 14 13 12 16 16 C 1.43201 * 120.14665 * 179.70224 * 15 14 13 17 17 N 6.84435 * 109.47659 * 240.03113 * 2 1 3 18 18 C 1.39626 * 119.70474 * 359.71875 * 15 14 13 19 19 C 1.37956 * 119.84375 * 0.02562 * 18 15 14 20 20 H 1.08989 * 109.47330 * 300.00726 * 1 2 3 21 21 H 1.09000 * 109.46918 * 60.00451 * 1 2 3 22 22 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47181 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46875 * 299.99576 * 3 2 1 25 25 H 1.09003 * 109.47066 * 59.99513 * 3 2 1 26 26 H 0.97003 * 120.00178 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.91745 * 359.97438 * 13 12 2 28 28 H 1.08005 * 120.07787 * 180.25346 * 14 13 12 29 29 H 1.07998 * 120.07979 * 179.97438 * 18 15 14 30 30 H 1.08001 * 119.91970 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6555 -1.5868 1.1316 6 6 1.7008 -0.2381 2.4828 7 7 0.9467 0.8327 2.6033 8 14 2.3240 -1.1181 4.0081 9 1 3.1469 -2.2863 3.6041 10 1 3.1507 -0.1850 4.8150 11 1 1.1692 -1.5830 4.8179 12 6 2.0324 -0.7105 -1.2303 13 6 3.3915 -0.8962 -1.4116 14 6 3.8580 -1.5500 -2.5332 15 6 2.9557 -2.0149 -3.4921 16 6 3.4333 -2.6888 -4.6619 17 7 3.8121 -3.2233 -5.5900 18 6 1.5859 -1.8194 -3.3054 19 6 1.1328 -1.1686 -2.1765 20 1 -0.3633 0.5139 0.8898 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 0.7138 1.1652 3.4843 27 1 4.0884 -0.5314 -0.6716 28 1 4.9189 -1.6979 -2.6714 29 1 0.8827 -2.1761 -4.0434 30 1 0.0736 -1.0163 -2.0311 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260073997.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 42.226789 kcal Electronic energy + Delta-G solvation = -13632.537943 eV Core-core repulsion = 11392.501793 eV Total energy + Delta-G solvation = -2240.036150 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22761 -36.55029 -35.09641 -31.79570 -30.69678 -29.16156 -25.95175 -25.27732 -23.36909 -21.85072 -19.35569 -18.43734 -16.31501 -15.24375 -14.79894 -14.20356 -14.16441 -13.73250 -13.15903 -12.99341 -12.83837 -12.55784 -11.98193 -11.67982 -11.50626 -11.23384 -11.01333 -10.73294 -10.65837 -10.49574 -10.23772 -9.70505 -9.50520 -8.99420 -8.53982 -8.44287 -8.00412 -6.07785 -4.18547 1.28667 1.84978 2.88363 3.23071 3.31679 3.33117 3.37543 4.22501 4.29963 4.41749 5.18929 5.25721 5.31719 5.70747 5.93640 5.99423 6.27628 6.38173 6.61152 6.67764 6.72482 6.77360 6.90063 6.97859 7.16040 7.27901 7.41245 7.52912 7.65652 7.71972 7.95033 8.07449 8.31098 8.81831 9.47514 10.93198 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043256 B = 0.007872 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.159296 B = 3556.136619 C = 3845.560747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 C -0.127 4.127 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.008 3.992 13 C -0.116 4.116 14 C -0.074 4.074 15 C -0.073 4.073 16 C 0.271 3.729 17 N -0.452 5.452 18 C -0.072 4.072 19 C -0.138 4.138 20 H 0.087 0.913 21 H 0.014 0.986 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.011 0.989 25 H 0.089 0.911 26 H 0.260 0.740 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -0.864 -5.045 5.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.088 3.912 3 C -0.185 4.185 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.007 3.993 13 C -0.134 4.134 14 C -0.094 4.094 15 C -0.077 4.077 16 C -0.042 4.042 17 N -0.128 5.128 18 C -0.092 4.092 19 C -0.156 4.156 20 H 0.105 0.895 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.287 -1.582 -6.344 6.664 hybrid contribution 0.173 -0.319 1.236 1.288 sum 1.460 -1.901 -5.108 5.643 Atomic orbital electron populations 1.21920 0.97362 0.99339 1.00681 1.17395 0.92915 0.92231 0.88664 1.21817 0.98645 0.97345 1.00699 1.21076 1.31532 1.12113 0.89381 0.92231 1.24901 0.94860 0.94884 0.98852 1.69813 1.36627 1.22550 1.23272 0.86532 0.78703 0.79747 0.83032 1.19761 1.21018 1.21033 1.20997 0.92678 0.90777 0.94806 1.21083 0.96380 0.99208 0.96706 1.21096 0.98501 0.96647 0.93163 1.15885 0.94127 1.06120 0.91545 1.25955 0.92881 0.92630 0.92784 1.81177 1.08743 1.11199 1.11660 1.21061 0.92946 0.97505 0.97717 1.21270 1.00906 0.99771 0.93607 0.89462 0.96701 0.95047 0.95131 0.96982 0.89278 0.92936 0.84870 0.86083 0.86139 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 6.91 37.16 0.26 -2.64 16 2 C 0.09 1.92 0.58 -156.81 -0.09 1.83 16 3 C -0.13 -2.75 8.09 37.16 0.30 -2.45 16 4 C -0.50 -12.26 7.60 -34.44 -0.26 -12.52 16 5 H 0.06 1.47 7.50 -52.48 -0.39 1.08 16 6 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.88 -22.57 9.35 55.43 0.52 -22.05 16 8 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.01 0.16 4.73 -104.53 -0.49 -0.34 16 13 C -0.12 -1.99 8.60 -39.64 -0.34 -2.34 16 14 C -0.07 -1.10 9.76 -39.17 -0.38 -1.48 16 15 C -0.07 -1.10 5.73 -106.93 -0.61 -1.71 16 16 C 0.27 4.18 15.33 -22.47 -0.34 3.83 16 17 N -0.45 -7.60 18.54 41.84 0.78 -6.82 16 18 C -0.07 -1.05 9.76 -39.17 -0.38 -1.43 16 19 C -0.14 -2.28 8.96 -39.64 -0.36 -2.64 16 20 H 0.09 2.08 6.08 -51.94 -0.32 1.77 16 21 H 0.01 0.27 7.33 -51.93 -0.38 -0.11 16 22 H 0.03 0.64 7.68 -51.93 -0.40 0.25 16 23 H 0.03 0.62 7.58 -51.93 -0.39 0.23 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 2.13 6.06 -51.93 -0.31 1.82 16 26 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.13 2.30 7.68 -52.49 -0.40 1.90 16 28 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 2.09 5.88 -52.49 -0.31 1.78 16 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -25.37 258.29 -5.94 -31.32 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.31 Total: -0.79 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.80 Total: -20.32 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 1.29 Total: -28.88 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.37 -5.94 -31.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073997.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.543 kcal (2) G-P(sol) polarization free energy of solvation -25.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds