Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.50699 * 109.46780 * 119.99538 * 2 1 3 5 5 H 1.08004 * 120.00173 * 120.17594 * 4 2 1 6 6 C 1.37879 * 120.00418 * 299.90413 * 4 2 1 7 7 N 1.31517 * 119.99509 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47089 * 119.99764 * 8 6 4 11 11 H 1.48503 * 109.47220 * 239.99429 * 8 6 4 12 12 C 1.50695 * 109.47516 * 239.99543 * 2 1 3 13 13 C 1.38359 * 119.85162 * 183.35334 * 12 2 1 14 14 C 1.37948 * 120.15628 * 179.76432 * 13 12 2 15 15 C 1.39630 * 119.84026 * 0.53530 * 14 13 12 16 16 C 1.43201 * 120.14665 * 179.70224 * 15 14 13 17 17 N 6.84435 * 109.47659 * 240.03113 * 2 1 3 18 18 C 1.39626 * 119.70474 * 359.71875 * 15 14 13 19 19 C 1.37956 * 119.84375 * 0.02562 * 18 15 14 20 20 H 1.08989 * 109.47330 * 300.00726 * 1 2 3 21 21 H 1.09000 * 109.46918 * 60.00451 * 1 2 3 22 22 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47181 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46875 * 299.99576 * 3 2 1 25 25 H 1.09003 * 109.47066 * 59.99513 * 3 2 1 26 26 H 0.97003 * 120.00178 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.91745 * 359.97438 * 13 12 2 28 28 H 1.08005 * 120.07787 * 180.25346 * 14 13 12 29 29 H 1.07998 * 120.07979 * 179.97438 * 18 15 14 30 30 H 1.08001 * 119.91970 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6555 -1.5868 1.1316 6 6 1.7008 -0.2381 2.4828 7 7 0.9467 0.8327 2.6033 8 14 2.3240 -1.1181 4.0081 9 1 3.1469 -2.2863 3.6041 10 1 3.1507 -0.1850 4.8150 11 1 1.1692 -1.5830 4.8179 12 6 2.0324 -0.7105 -1.2303 13 6 3.3915 -0.8962 -1.4116 14 6 3.8580 -1.5500 -2.5332 15 6 2.9557 -2.0149 -3.4921 16 6 3.4333 -2.6888 -4.6619 17 7 3.8121 -3.2233 -5.5900 18 6 1.5859 -1.8194 -3.3054 19 6 1.1328 -1.1686 -2.1765 20 1 -0.3633 0.5139 0.8898 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 0.7138 1.1652 3.4843 27 1 4.0884 -0.5314 -0.6716 28 1 4.9189 -1.6979 -2.6714 29 1 0.8827 -2.1761 -4.0434 30 1 0.0736 -1.0163 -2.0311 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260073997.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 31.281744 kcal Electronic energy + Delta-G solvation = -13633.012556 eV Core-core repulsion = 11392.501793 eV Total energy + Delta-G solvation = -2240.510763 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55477 -37.93197 -36.60588 -33.52722 -31.95282 -30.61984 -27.62197 -27.14010 -24.75797 -23.13849 -20.96593 -19.70099 -18.04601 -16.98522 -16.10852 -15.77113 -15.43480 -15.02113 -14.73199 -14.34654 -14.23713 -13.89857 -13.48881 -13.26508 -13.09609 -12.85275 -12.72157 -12.44600 -12.22960 -12.09288 -11.93876 -11.36312 -11.11687 -10.72736 -10.31212 -9.76244 -9.38660 -7.95502 -6.10653 0.01924 0.61705 1.44919 1.50563 1.58153 1.65972 2.07372 2.50558 2.97485 3.10661 3.29207 4.12362 4.13610 4.30333 4.69213 4.71532 4.88961 4.94632 5.01977 5.17111 5.19969 5.29063 5.47348 5.49714 5.55480 5.67668 5.76068 5.91154 6.09030 6.23451 6.34245 6.49944 6.50601 6.95058 7.56882 9.03059 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043256 B = 0.007872 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.159296 B = 3556.136619 C = 3845.560747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.081 3.919 3 C -0.120 4.120 4 C -0.510 4.510 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.940 3.060 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.287 1.287 12 C -0.016 4.016 13 C -0.126 4.126 14 C -0.063 4.063 15 C -0.068 4.068 16 C 0.290 3.710 17 N -0.473 5.473 18 C -0.059 4.059 19 C -0.141 4.141 20 H 0.058 0.942 21 H 0.036 0.964 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.258 0.742 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -1.688 -6.365 6.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 C -0.178 4.178 4 C -0.548 4.548 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.542 5.542 8 Si 0.768 3.232 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.213 1.213 12 C -0.017 4.017 13 C -0.145 4.145 14 C -0.083 4.083 15 C -0.071 4.071 16 C -0.023 4.023 17 N -0.150 5.150 18 C -0.079 4.079 19 C -0.159 4.159 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.168 0.832 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.588 -2.409 -7.667 8.192 hybrid contribution 0.097 -0.080 1.584 1.589 sum 1.685 -2.489 -6.083 6.785 Atomic orbital electron populations 1.21783 0.97297 0.99126 1.00255 1.17357 0.93012 0.92239 0.89336 1.21685 0.98565 0.97526 0.99981 1.21339 1.30943 1.11792 0.90701 0.93072 1.25465 0.95373 0.95558 1.00948 1.69938 1.37513 1.23427 1.23345 0.85778 0.78010 0.78816 0.80616 1.19649 1.21100 1.21279 1.20801 0.93825 0.92429 0.94603 1.21036 0.95717 1.00141 0.97559 1.21256 0.99867 0.95179 0.91986 1.15931 0.94375 1.05634 0.91191 1.25812 0.92201 0.91996 0.92339 1.81217 1.09465 1.11919 1.12375 1.21294 0.93328 0.95950 0.97322 1.21313 1.00906 0.99940 0.93761 0.92355 0.94535 0.95057 0.95101 0.95501 0.92003 0.93250 0.85641 0.83630 0.83173 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 6.91 71.98 0.50 -4.88 16 2 C 0.08 3.49 0.58 -53.67 -0.03 3.46 16 3 C -0.12 -5.17 8.09 71.98 0.58 -4.59 16 4 C -0.51 -24.92 7.60 25.60 0.19 -24.73 16 5 H 0.05 2.53 7.50 -2.91 -0.02 2.51 16 6 C 0.03 1.29 5.15 84.65 0.44 1.73 16 7 N -0.90 -46.89 9.35 21.45 0.20 -46.69 16 8 Si 0.94 40.87 29.54 68.60 2.03 42.90 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 C -0.02 -0.57 4.73 -19.81 -0.09 -0.67 16 13 C -0.13 -4.16 8.60 22.23 0.19 -3.97 16 14 C -0.06 -1.70 9.76 22.54 0.22 -1.48 16 15 C -0.07 -1.80 5.73 -21.36 -0.12 -1.92 16 16 C 0.29 7.99 15.33 88.33 1.35 9.34 16 17 N -0.47 -14.64 18.54 19.00 0.35 -14.29 16 18 C -0.06 -1.51 9.76 22.54 0.22 -1.29 16 19 C -0.14 -4.34 8.96 22.23 0.20 -4.14 16 20 H 0.06 2.81 6.08 -2.39 -0.01 2.80 16 21 H 0.04 1.34 7.33 -2.39 -0.02 1.32 16 22 H 0.03 1.27 7.68 -2.38 -0.02 1.25 16 23 H 0.03 1.27 7.58 -2.39 -0.02 1.25 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 3.00 6.06 -2.39 -0.01 2.99 16 26 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 27 H 0.13 4.26 7.68 -2.91 -0.02 4.24 16 28 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.14 4.04 5.88 -2.91 -0.02 4.03 16 Total: -1.00 -53.17 258.29 7.37 -45.80 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.14 Total: 5.42 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 3.65 Total: -33.14 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.55 Total: -60.98 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -53.17 7.37 -45.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260073997.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.081 kcal (2) G-P(sol) polarization free energy of solvation -53.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds