Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 116.99892 * 2 1 4 4 O 1.21513 * 119.99857 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.47023 * 125.64455 * 359.68760 * 5 3 2 7 7 C 1.54339 * 107.26254 * 178.84937 * 6 5 3 8 8 C 1.55151 * 103.02361 * 338.14372 * 7 6 5 9 9 O 1.42893 * 111.00789 * 277.23236 * 8 7 6 10 10 C 1.50704 * 111.04111 * 153.39211 * 8 7 6 11 11 H 1.08002 * 119.99686 * 6.33223 * 10 8 7 12 12 C 1.37868 * 120.00210 * 186.33242 * 10 8 7 13 13 N 1.31516 * 120.00161 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00058 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46833 * 60.00160 * 14 12 10 16 16 H 1.48501 * 109.47233 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47480 * 300.00428 * 14 12 10 18 18 C 1.47418 * 125.64934 * 179.97438 * 5 3 2 19 19 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47122 * 299.99932 * 1 2 3 21 21 H 1.09000 * 109.47070 * 59.99958 * 1 2 3 22 22 H 1.08992 * 109.88794 * 298.39361 * 6 5 3 23 23 H 1.09002 * 109.88272 * 59.57139 * 6 5 3 24 24 H 1.09002 * 110.84888 * 219.67308 * 7 6 5 25 25 H 1.09003 * 110.50926 * 96.45663 * 7 6 5 26 26 H 0.96696 * 114.00661 * 173.65004 * 9 8 7 27 27 H 0.97004 * 119.99879 * 180.02562 * 13 12 10 28 28 H 1.08998 * 110.37318 * 322.93159 * 18 5 3 29 29 H 1.09004 * 110.36759 * 85.25481 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.3273 0.1220 0.0054 7 6 5.7643 0.6843 -0.0273 8 6 5.5693 2.1080 -0.6125 9 8 5.4998 2.0704 -2.0392 10 6 6.6633 3.0367 -0.1522 11 1 7.4967 2.6498 0.4154 12 6 6.6002 4.3801 -0.4556 13 7 5.5851 4.8513 -1.1464 14 14 7.9560 5.5313 0.1155 15 1 9.2525 5.0937 -0.4613 16 1 7.6550 6.9134 -0.3367 17 1 8.0386 5.5019 1.5979 18 6 4.2044 2.5115 -0.0011 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 4.1783 -0.4673 0.9101 23 1 4.1533 -0.4964 -0.8752 24 1 6.4011 0.0841 -0.6772 25 1 6.1777 0.7347 0.9800 26 1 5.2820 2.9206 -2.4450 27 1 5.5410 5.7964 -1.3602 28 1 3.7224 3.2707 -0.6170 29 1 4.3383 2.8768 1.0171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260083315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = -127.276496 kcal Electronic energy + Delta-G solvation = -15059.429165 eV Core-core repulsion = 12368.900787 eV Total energy + Delta-G solvation = -2690.528378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90665 -37.90324 -35.70085 -34.29072 -32.25570 -30.28811 -27.96230 -27.23275 -24.99224 -22.67150 -20.03693 -19.62844 -17.50703 -17.09654 -16.33234 -16.11132 -15.09075 -14.51741 -14.21346 -13.87404 -13.10445 -12.83984 -12.73230 -12.43365 -11.66081 -11.58647 -11.49219 -11.03567 -10.84654 -10.61233 -10.51353 -10.41589 -10.21406 -9.96421 -9.39479 -8.72183 -8.42605 -7.87095 -6.29886 -4.40040 2.71213 3.21955 3.27680 3.29454 3.39733 4.24636 4.58226 4.97388 5.34551 5.40782 5.44608 5.62126 5.72699 5.78349 6.04918 6.15174 6.49805 6.63530 6.73214 6.83319 6.93455 7.21272 7.32210 7.71809 7.99100 8.18379 8.63575 8.86503 9.27559 9.36042 10.77322 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050102 B = 0.008763 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.729336 B = 3194.545337 C = 3459.175984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.654 3.346 4 O -0.582 6.582 5 N -0.594 5.594 6 C 0.110 3.890 7 C -0.118 4.118 8 C 0.249 3.751 9 O -0.582 6.582 10 C -0.538 4.538 11 H 0.068 0.932 12 C 0.071 3.929 13 N -0.893 5.893 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.111 3.889 19 H 0.096 0.904 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.381 0.619 27 H 0.271 0.729 28 H 0.089 0.911 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 -7.501 2.255 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.291 6.291 3 C 0.408 3.592 4 O -0.472 6.472 5 N -0.334 5.334 6 C -0.013 4.013 7 C -0.156 4.156 8 C 0.208 3.792 9 O -0.390 6.390 10 C -0.577 4.577 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.531 5.531 14 Si 0.733 3.267 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.009 4.009 19 H 0.114 0.886 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.231 0.769 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.375 -7.678 2.279 9.126 hybrid contribution 0.267 1.328 0.235 1.375 sum -4.107 -6.350 2.515 7.970 Atomic orbital electron populations 1.23055 0.75636 1.02639 1.02372 1.86244 1.23235 1.31983 1.87652 1.17721 0.82565 0.81721 0.77227 1.90954 1.64037 1.34916 1.57319 1.47599 1.00933 1.11096 1.73737 1.21994 0.90464 0.88422 1.00449 1.22647 0.93639 0.97946 1.01354 1.19642 0.89911 0.90316 0.79337 1.86117 1.93727 1.38280 1.20876 1.21416 1.07512 0.92500 1.36244 0.91371 1.25092 0.95869 0.98313 0.93946 1.69708 1.29720 1.15448 1.38273 0.86432 0.81783 0.79341 0.79182 1.19963 1.21081 1.19978 1.23392 0.92158 0.83693 1.01638 0.88596 0.92307 0.92231 0.92473 0.92020 0.90478 0.90263 0.76884 0.91855 0.89280 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.56 101.05 1.07 1.83 15 2 O -0.38 -6.76 10.17 -40.32 -0.41 -7.17 15 3 C 0.65 14.23 8.62 54.05 0.47 14.69 15 4 O -0.58 -14.21 16.39 -19.28 -0.32 -14.53 15 5 N -0.59 -13.00 3.33 -176.30 -0.59 -13.58 15 6 C 0.11 2.05 6.90 -3.06 -0.02 2.03 15 7 C -0.12 -2.35 6.13 -24.89 -0.15 -2.50 15 8 C 0.25 6.01 0.87 -89.63 -0.08 5.93 15 9 O -0.58 -14.80 13.16 -35.23 -0.46 -15.26 15 10 C -0.54 -13.86 8.27 -34.44 -0.28 -14.14 15 11 H 0.07 1.71 7.79 -52.49 -0.41 1.30 15 12 C 0.07 1.84 5.29 -17.82 -0.09 1.75 15 13 N -0.89 -23.66 10.69 55.43 0.59 -23.07 15 14 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 15 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 18 C 0.11 2.70 5.38 -2.54 -0.01 2.68 15 19 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.08 1.47 8.03 -51.93 -0.42 1.05 15 26 H 0.38 9.90 7.56 45.56 0.34 10.25 15 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 28 H 0.09 2.41 7.33 -51.93 -0.38 2.03 15 29 H 0.06 1.58 8.03 -51.93 -0.42 1.16 15 LS Contribution 252.50 15.07 3.81 3.81 Total: -1.00 -29.45 252.50 -4.46 -33.91 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.95 Total: 8.51 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 0.89 Total: 12.28 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.01 Total: -36.65 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.19 Total: -36.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.45 -4.46 -33.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.365 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds