Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34639 * 116.99892 * 2 1 4 4 O 1.21513 * 119.99857 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00041 * 180.02562 * 3 2 1 6 6 C 1.47023 * 125.64455 * 359.68760 * 5 3 2 7 7 C 1.54339 * 107.26254 * 178.84937 * 6 5 3 8 8 C 1.55151 * 103.02361 * 338.14372 * 7 6 5 9 9 O 1.42893 * 111.00789 * 277.23236 * 8 7 6 10 10 C 1.50704 * 111.04111 * 153.39211 * 8 7 6 11 11 H 1.08002 * 119.99686 * 6.33223 * 10 8 7 12 12 C 1.37868 * 120.00210 * 186.33242 * 10 8 7 13 13 N 1.31516 * 120.00161 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00058 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46833 * 60.00160 * 14 12 10 16 16 H 1.48501 * 109.47233 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47480 * 300.00428 * 14 12 10 18 18 C 1.47418 * 125.64934 * 179.97438 * 5 3 2 19 19 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47122 * 299.99932 * 1 2 3 21 21 H 1.09000 * 109.47070 * 59.99958 * 1 2 3 22 22 H 1.08992 * 109.88794 * 298.39361 * 6 5 3 23 23 H 1.09002 * 109.88272 * 59.57139 * 6 5 3 24 24 H 1.09002 * 110.84888 * 219.67308 * 7 6 5 25 25 H 1.09003 * 110.50926 * 96.45663 * 7 6 5 26 26 H 0.96696 * 114.00661 * 173.65004 * 9 8 7 27 27 H 0.97004 * 119.99879 * 180.02562 * 13 12 10 28 28 H 1.08998 * 110.37318 * 322.93159 * 18 5 3 29 29 H 1.09004 * 110.36759 * 85.25481 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.3273 0.1220 0.0054 7 6 5.7643 0.6843 -0.0273 8 6 5.5693 2.1080 -0.6125 9 8 5.4998 2.0704 -2.0392 10 6 6.6633 3.0367 -0.1522 11 1 7.4967 2.6498 0.4154 12 6 6.6002 4.3801 -0.4556 13 7 5.5851 4.8513 -1.1464 14 14 7.9560 5.5313 0.1155 15 1 9.2525 5.0937 -0.4613 16 1 7.6550 6.9134 -0.3367 17 1 8.0386 5.5019 1.5979 18 6 4.2044 2.5115 -0.0011 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 4.1783 -0.4673 0.9101 23 1 4.1533 -0.4964 -0.8752 24 1 6.4011 0.0841 -0.6772 25 1 6.1777 0.7347 0.9800 26 1 5.2820 2.9206 -2.4450 27 1 5.5410 5.7964 -1.3602 28 1 3.7224 3.2707 -0.6170 29 1 4.3383 2.8768 1.0171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260083315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = -149.550046 kcal Electronic energy + Delta-G solvation = -15060.395019 eV Core-core repulsion = 12368.900787 eV Total energy + Delta-G solvation = -2691.494232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.53874 -39.60964 -37.32161 -36.13672 -34.23859 -31.99674 -29.68378 -28.58535 -26.80894 -24.32697 -21.64349 -21.42871 -19.26546 -18.89294 -17.93508 -17.68097 -17.01947 -16.29035 -15.80977 -15.34547 -14.88314 -14.58502 -14.26439 -13.97994 -13.51271 -13.29857 -12.87976 -12.80269 -12.56828 -12.34880 -12.26814 -12.10439 -11.79392 -11.69304 -11.21239 -10.66442 -10.36508 -9.62412 -8.24595 -6.42101 1.17144 1.46472 1.47312 1.55057 1.70860 2.39668 3.01777 3.10415 3.77863 4.06906 4.15913 4.33401 4.35886 4.37940 4.62822 4.67945 4.72299 5.00108 5.06361 5.18481 5.23999 5.38236 5.45330 5.75046 6.05790 6.50412 6.66776 7.19903 7.27096 7.35028 8.80874 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050102 B = 0.008763 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.729336 B = 3194.545337 C = 3459.175984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.370 6.370 3 C 0.652 3.348 4 O -0.618 6.618 5 N -0.601 5.601 6 C 0.111 3.889 7 C -0.111 4.111 8 C 0.232 3.768 9 O -0.587 6.587 10 C -0.556 4.556 11 H 0.073 0.927 12 C 0.027 3.973 13 N -0.917 5.917 14 Si 0.966 3.034 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.124 3.876 19 H 0.144 0.856 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.374 0.626 27 H 0.270 0.730 28 H 0.052 0.948 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.773 -8.997 2.983 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.407 3.593 4 O -0.511 6.511 5 N -0.340 5.340 6 C -0.010 4.010 7 C -0.149 4.149 8 C 0.192 3.808 9 O -0.395 6.395 10 C -0.594 4.594 11 H 0.091 0.909 12 C -0.174 4.174 13 N -0.555 5.555 14 Si 0.791 3.209 15 H -0.195 1.195 16 H -0.213 1.213 17 H -0.193 1.193 18 C 0.003 3.997 19 H 0.162 0.838 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.108 0.892 23 H 0.090 0.910 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.223 0.777 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.054 -9.230 3.014 10.522 hybrid contribution 0.083 1.738 0.000 1.740 sum -3.971 -7.491 3.014 8.999 Atomic orbital electron populations 1.23520 0.72923 1.05764 1.02342 1.86255 1.25729 1.29377 1.86990 1.17847 0.82487 0.82372 0.76630 1.90923 1.64879 1.36509 1.58798 1.47596 1.01530 1.11200 1.73719 1.22168 0.88826 0.87473 1.02582 1.22661 0.94923 0.95248 1.02030 1.19889 0.89354 0.92966 0.78608 1.86110 1.93717 1.37772 1.21890 1.21758 1.08117 0.93183 1.36392 0.90887 1.25837 0.97735 0.99789 0.94021 1.69831 1.31111 1.15507 1.39098 0.85482 0.79267 0.77244 0.78891 1.19475 1.21254 1.19346 1.22978 0.92595 0.84078 1.00045 0.83815 0.92160 0.92587 0.89157 0.91026 0.89250 0.88745 0.77747 0.92063 0.92943 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.56 113.37 1.20 2.35 15 2 O -0.37 -12.47 10.17 -55.49 -0.56 -13.03 15 3 C 0.65 27.93 8.62 129.79 1.12 29.05 15 4 O -0.62 -30.49 16.39 19.80 0.32 -30.16 15 5 N -0.60 -25.83 3.33 -942.11 -3.13 -28.96 15 6 C 0.11 3.87 6.90 86.73 0.60 4.47 15 7 C -0.11 -4.18 6.13 31.79 0.19 -3.99 15 8 C 0.23 11.16 0.87 -10.15 -0.01 11.15 15 9 O -0.59 -30.06 13.16 -148.98 -1.96 -32.02 15 10 C -0.56 -28.44 8.27 25.60 0.21 -28.22 15 11 H 0.07 3.57 7.79 -2.91 -0.02 3.55 15 12 C 0.03 1.41 5.29 84.65 0.45 1.86 15 13 N -0.92 -49.50 10.69 21.44 0.23 -49.27 15 14 Si 0.97 41.08 29.54 68.60 2.03 43.11 15 15 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 16 H -0.29 -12.17 7.11 99.48 0.71 -11.47 15 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 18 C 0.12 6.13 5.38 86.85 0.47 6.60 15 19 H 0.14 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 21 H 0.06 1.39 8.14 -2.39 -0.02 1.38 15 22 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.09 3.25 8.03 -2.39 -0.02 3.23 15 26 H 0.37 19.97 7.56 -74.06 -0.56 19.41 15 27 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 28 H 0.05 2.94 7.33 -2.39 -0.02 2.93 15 29 H 0.05 2.63 8.03 -2.38 -0.02 2.61 15 Total: -1.00 -63.30 252.50 1.74 -61.55 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.60 Total: 25.54 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 4.23 Total: 23.26 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.90 Total: -78.23 kcal Atomic # 8 Polarization: -73.02 SS G_CDS: -2.20 Total: -75.22 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -63.30 1.74 -61.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.997 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds