Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34641 * 116.99796 * 2 1 4 4 O 1.21512 * 120.00156 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99828 * 180.02562 * 3 2 1 6 6 C 1.47421 * 125.64852 * 359.97275 * 5 3 2 7 7 C 1.54917 * 104.83002 * 155.91133 * 6 5 3 8 8 C 1.55151 * 101.58025 * 37.01304 * 7 6 5 9 9 O 1.42892 * 110.72056 * 82.86198 * 8 7 6 10 10 C 1.50703 * 110.71812 * 206.13470 * 8 7 6 11 11 H 1.07998 * 119.99840 * 0.02562 * 10 8 7 12 12 C 1.37880 * 119.99803 * 179.97438 * 10 8 7 13 13 N 1.31508 * 120.00405 * 0.02562 * 12 10 8 14 14 Si 1.86808 * 119.99777 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46831 * 90.00202 * 14 12 10 16 16 H 1.48495 * 109.46847 * 210.00273 * 14 12 10 17 17 H 1.48495 * 109.47046 * 330.00563 * 14 12 10 18 18 C 1.47021 * 125.64696 * 180.02562 * 5 3 2 19 19 H 1.08999 * 109.46980 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47204 * 299.99339 * 1 2 3 21 21 H 1.08997 * 109.47481 * 59.99416 * 1 2 3 22 22 H 1.09002 * 110.36865 * 37.07626 * 6 5 3 23 23 H 1.09001 * 110.37117 * 274.74944 * 6 5 3 24 24 H 1.08998 * 111.00193 * 155.08783 * 7 6 5 25 25 H 1.09004 * 111.00194 * 278.93638 * 7 6 5 26 26 H 0.96706 * 114.00295 * 179.97438 * 9 8 7 27 27 H 0.97000 * 120.00695 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.88310 * 300.43775 * 18 5 3 29 29 H 1.09002 * 109.88672 * 61.44815 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.3298 0.1189 -0.0006 7 6 5.6450 0.6629 -0.6124 8 6 5.6901 2.0991 -0.0272 9 8 6.2360 2.0900 1.2933 10 6 6.4789 3.0164 -0.9257 11 1 6.9174 2.6349 -1.8359 12 6 6.6400 4.3430 -0.5861 13 7 6.1057 4.8077 0.5220 14 14 7.6185 5.4799 -1.6995 15 1 6.7084 6.1023 -2.6943 16 1 8.2594 6.5415 -0.8826 17 1 8.6654 4.6996 -2.4067 18 6 4.2022 2.5082 -0.0001 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 3.9298 -0.6868 -0.6162 23 1 4.5011 -0.2300 1.0178 24 1 6.5022 0.0780 -0.2790 25 1 5.5893 0.6860 -1.7008 26 1 6.2865 2.9640 1.7041 27 1 6.2193 5.7409 0.7611 28 1 3.9646 3.1010 -0.8833 29 1 3.9901 3.0841 0.9008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260083320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -149.840896 kcal Electronic energy + Delta-G solvation = -15025.859270 eV Core-core repulsion = 12334.352426 eV Total energy + Delta-G solvation = -2691.506844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.56353 -39.63745 -37.35629 -36.20096 -34.18442 -31.94254 -29.75821 -28.59129 -26.81006 -24.35454 -21.75032 -21.34669 -19.26559 -18.97153 -17.99091 -17.71580 -17.05964 -16.30429 -15.59876 -15.38916 -14.82457 -14.68733 -14.37751 -13.94168 -13.49225 -13.41237 -12.87604 -12.86014 -12.56536 -12.31257 -12.28524 -12.12204 -11.80404 -11.70014 -11.21859 -10.65664 -10.34644 -9.74454 -8.28057 -6.44106 1.14046 1.43684 1.45660 1.55388 1.68127 2.38195 2.98698 3.07516 3.78968 4.06679 4.14273 4.35290 4.36817 4.38199 4.60691 4.63979 4.69674 4.95404 5.09472 5.15011 5.21059 5.34876 5.46348 5.73916 6.01311 6.48214 6.63839 7.17708 7.28098 7.37535 8.78572 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046178 B = 0.008741 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.200356 B = 3202.624868 C = 3446.266095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.368 6.368 3 C 0.653 3.347 4 O -0.618 6.618 5 N -0.602 5.602 6 C 0.110 3.890 7 C -0.111 4.111 8 C 0.234 3.766 9 O -0.588 6.588 10 C -0.558 4.558 11 H 0.072 0.928 12 C 0.026 3.974 13 N -0.918 5.918 14 Si 0.966 3.034 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.264 1.264 18 C 0.133 3.867 19 H 0.145 0.855 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.379 0.621 27 H 0.272 0.728 28 H 0.042 0.958 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -9.169 -1.803 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.282 6.282 3 C 0.408 3.592 4 O -0.511 6.511 5 N -0.341 5.341 6 C -0.011 4.011 7 C -0.149 4.149 8 C 0.194 3.806 9 O -0.397 6.397 10 C -0.596 4.596 11 H 0.090 0.910 12 C -0.175 4.175 13 N -0.558 5.558 14 Si 0.791 3.209 15 H -0.204 1.204 16 H -0.207 1.207 17 H -0.188 1.188 18 C 0.012 3.988 19 H 0.163 0.837 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.119 0.881 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.230 0.770 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.181 -9.403 -1.804 10.887 hybrid contribution 0.059 1.823 -0.155 1.831 sum -5.122 -7.580 -1.959 9.356 Atomic orbital electron populations 1.23532 0.72829 1.05830 1.02379 1.86251 1.25774 1.29182 1.86972 1.17829 0.82392 0.82428 0.76583 1.90924 1.64927 1.36550 1.58692 1.47586 1.01605 1.11138 1.73821 1.22474 0.88969 0.87822 1.01828 1.22785 0.96750 0.94993 1.00378 1.19706 0.86002 0.93302 0.81625 1.86076 1.85821 1.36228 1.31556 1.21859 1.34391 0.94805 1.08504 0.91003 1.25834 0.95566 0.99533 0.96524 1.69667 1.44977 1.16527 1.24618 0.85422 0.78743 0.78169 0.78521 1.20440 1.20717 1.18846 1.22728 0.93210 0.83688 0.99223 0.83742 0.92428 0.92255 0.88074 0.90964 0.88680 0.89433 0.76960 0.91813 0.93974 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 10.56 113.37 1.20 2.31 15 2 O -0.37 -12.07 10.10 -55.50 -0.56 -12.63 15 3 C 0.65 27.52 8.62 129.79 1.12 28.64 15 4 O -0.62 -30.08 16.46 19.80 0.33 -29.75 15 5 N -0.60 -25.76 3.33 -942.08 -3.13 -28.90 15 6 C 0.11 3.85 6.91 86.86 0.60 4.45 15 7 C -0.11 -4.24 6.22 31.99 0.20 -4.04 15 8 C 0.23 11.30 0.86 -10.35 -0.01 11.29 15 9 O -0.59 -29.73 13.09 -148.98 -1.95 -31.68 15 10 C -0.56 -28.79 8.11 25.60 0.21 -28.58 15 11 H 0.07 3.58 7.76 -2.91 -0.02 3.56 15 12 C 0.03 1.35 5.28 84.66 0.45 1.80 15 13 N -0.92 -49.29 10.98 21.45 0.24 -49.05 15 14 Si 0.97 41.35 29.54 68.60 2.03 43.38 15 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 18 C 0.13 6.65 5.53 86.73 0.48 7.13 15 19 H 0.14 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.10 2.86 8.04 -2.39 -0.02 2.84 15 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.09 3.32 8.14 -2.39 -0.02 3.30 15 25 H 0.09 3.14 8.02 -2.38 -0.02 3.12 15 26 H 0.38 20.10 6.99 -74.05 -0.52 19.58 15 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 28 H 0.04 2.27 7.81 -2.39 -0.02 2.26 15 29 H 0.04 1.95 8.07 -2.39 -0.02 1.94 15 Total: -1.00 -63.12 252.61 1.82 -61.30 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.64 Total: 24.34 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 4.24 Total: 22.99 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.90 Total: -77.95 kcal Atomic # 8 Polarization: -71.87 SS G_CDS: -2.18 Total: -74.06 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -63.12 1.82 -61.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260083320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.543 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds