Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37973 * 119.92526 * 2 1 4 4 C 1.39610 * 119.84957 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.15148 * 179.97438 * 4 3 2 6 6 N 4.80126 * 134.70055 * 0.02562 * 2 1 3 7 7 C 1.39656 * 119.69500 * 0.04697 * 4 3 2 8 8 C 1.37925 * 119.84897 * 359.97378 * 7 4 3 9 9 C 1.50703 * 119.92065 * 180.02562 * 8 7 4 10 10 C 1.50695 * 109.47387 * 264.99905 * 9 8 7 11 11 H 1.08006 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99786 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00142 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47129 * 90.00209 * 14 12 10 16 16 H 1.48503 * 109.47316 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47039 * 329.99992 * 14 12 10 18 18 C 1.38345 * 119.92794 * 180.02562 * 2 1 3 19 19 C 1.50697 * 119.84211 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47090 * 269.97719 * 1 2 3 21 21 H 1.09003 * 109.47111 * 29.98021 * 1 2 3 22 22 H 1.08999 * 109.47342 * 149.97672 * 1 2 3 23 23 H 1.08003 * 120.07191 * 359.97438 * 3 2 1 24 24 H 1.08007 * 120.07559 * 180.25451 * 7 4 3 25 25 H 1.08995 * 109.47124 * 25.00692 * 9 8 7 26 26 H 1.09007 * 109.46640 * 145.00288 * 9 8 7 27 27 H 0.96999 * 119.99755 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47857 * 269.98182 * 19 18 2 29 29 H 1.09003 * 109.47027 * 29.98829 * 19 18 2 30 30 H 1.09001 * 109.46761 * 149.98003 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5913 1.1939 0.0005 5 6 4.3122 2.4312 0.0000 6 7 4.8842 3.4127 0.0015 7 6 4.2816 -0.0201 0.0001 8 6 3.5809 -1.2081 -0.0003 9 6 4.3241 -2.5192 -0.0003 10 6 4.4646 -3.0171 -1.4156 11 1 4.0569 -2.4415 -2.2336 12 6 5.1136 -4.2074 -1.6664 13 7 5.2367 -4.6417 -2.9017 14 14 5.8181 -5.2032 -0.2518 15 1 4.7910 -6.1544 0.2438 16 1 7.0068 -5.9590 -0.7220 17 1 6.2167 -4.2880 0.8477 18 6 2.1972 -1.1990 -0.0005 19 6 1.4384 -2.5010 -0.0017 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6552 2.1311 -0.0004 24 1 5.3616 -0.0287 0.0047 25 1 5.3132 -2.3760 0.4345 26 1 3.7706 -3.2505 0.5889 27 1 5.6937 -5.4789 -3.0781 28 1 1.2553 -2.8159 1.0256 29 1 0.4866 -2.3664 -0.5156 30 1 2.0246 -3.2625 -0.5161 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = 33.012047 kcal Electronic energy + Delta-G solvation = -13417.965595 eV Core-core repulsion = 11177.529863 eV Total energy + Delta-G solvation = -2240.435731 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53059 -36.39748 -33.97119 -33.05911 -32.00735 -28.61881 -27.15233 -26.45571 -23.01867 -21.78082 -19.99764 -17.45845 -16.86957 -15.82701 -15.09691 -14.40991 -14.08437 -13.55941 -13.37949 -12.95903 -12.87718 -12.62523 -12.51840 -12.29091 -12.13443 -11.83272 -11.50474 -11.27937 -11.00557 -10.68563 -10.46592 -10.09709 -10.02974 -9.44915 -8.65527 -8.22771 -7.99787 -6.14512 -4.14652 1.17110 1.77742 2.89628 3.22817 3.25892 3.32400 3.33869 4.17196 4.23986 4.34743 5.05683 5.18140 5.19572 5.36919 5.48313 5.60335 5.71039 5.86584 6.01816 6.06739 6.16164 6.24678 6.43059 6.59416 6.66612 6.78025 6.90813 6.96201 7.32807 7.37816 7.60289 7.72319 8.40825 8.90797 9.45138 10.98046 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.009013 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.348691 B = 3105.924420 C = 3741.555433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.089 4.089 4 C -0.045 4.045 5 C 0.270 3.730 6 N -0.444 5.444 7 C -0.073 4.073 8 C -0.031 4.031 9 C 0.014 3.986 10 C -0.515 4.515 11 H 0.075 0.925 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.874 3.126 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.264 1.264 18 C -0.049 4.049 19 C -0.128 4.128 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.122 0.878 24 H 0.128 0.872 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.478 5.190 7.321 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.110 4.110 4 C -0.048 4.048 5 C -0.044 4.044 6 N -0.119 5.119 7 C -0.094 4.094 8 C -0.032 4.032 9 C -0.023 4.023 10 C -0.552 4.552 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.701 3.299 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.050 4.050 19 C -0.184 4.184 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.140 0.860 24 H 0.146 0.854 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.514 6.566 7.205 12.307 hybrid contribution 0.335 -0.919 0.514 1.104 sum -7.179 5.647 7.718 11.958 Atomic orbital electron populations 1.20811 0.91213 1.02829 1.02053 1.19573 0.95882 0.92185 1.01987 1.20743 0.91609 0.97820 1.00838 1.15928 0.92210 0.86731 1.09971 1.25869 0.92959 0.92789 0.92820 1.81172 1.08993 1.11465 1.10320 1.21070 1.00092 0.90097 0.98098 1.20076 0.92852 0.96157 0.94065 1.18852 0.95043 0.89527 0.98887 1.20868 1.37260 1.06408 0.90692 0.90647 1.24982 0.95415 0.97238 0.95415 1.69892 1.42809 1.21777 1.18962 0.86863 0.79214 0.80655 0.83165 1.20059 1.21242 1.18868 1.19894 0.93443 0.94836 0.96817 1.21027 0.99922 0.95514 1.01917 0.91440 0.91943 0.90865 0.86019 0.85399 0.95290 0.95170 0.92510 0.91648 0.91776 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.60 36.00 0.35 -0.86 16 2 C -0.10 -1.37 5.87 -104.68 -0.61 -1.98 16 3 C -0.09 -1.25 9.41 -39.17 -0.37 -1.62 16 4 C -0.04 -0.71 5.73 -106.93 -0.61 -1.32 16 5 C 0.27 4.38 15.33 -22.48 -0.34 4.04 16 6 N -0.44 -7.80 18.54 41.84 0.78 -7.03 16 7 C -0.07 -1.28 9.38 -39.17 -0.37 -1.65 16 8 C -0.03 -0.59 5.06 -104.68 -0.53 -1.12 16 9 C 0.01 0.30 3.48 -29.04 -0.10 0.20 16 10 C -0.51 -13.48 8.86 -34.44 -0.31 -13.79 16 11 H 0.08 2.18 7.98 -52.48 -0.42 1.77 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 14 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 18 C -0.05 -0.82 5.89 -104.53 -0.62 -1.43 16 19 C -0.13 -1.96 8.79 36.00 0.32 -1.64 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 22 H 0.07 0.76 5.93 -51.93 -0.31 0.46 16 23 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 24 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 25 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 26 H 0.03 0.63 6.40 -51.93 -0.33 0.30 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.84 5.93 -51.93 -0.31 0.53 16 30 H 0.10 1.77 6.13 -51.93 -0.32 1.45 16 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -28.82 261.86 -5.80 -34.62 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.33 Total: -2.29 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.30 Total: -19.32 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 1.55 Total: -32.50 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.82 -5.80 -34.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.632 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds