Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37973 * 119.92526 * 2 1 4 4 C 1.39610 * 119.84957 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.15148 * 179.97438 * 4 3 2 6 6 N 4.80126 * 134.70055 * 0.02562 * 2 1 3 7 7 C 1.39656 * 119.69500 * 0.04697 * 4 3 2 8 8 C 1.37925 * 119.84897 * 359.97378 * 7 4 3 9 9 C 1.50703 * 119.92065 * 180.02562 * 8 7 4 10 10 C 1.50695 * 109.47387 * 264.99905 * 9 8 7 11 11 H 1.08006 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99786 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00142 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47129 * 90.00209 * 14 12 10 16 16 H 1.48503 * 109.47316 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47039 * 329.99992 * 14 12 10 18 18 C 1.38345 * 119.92794 * 180.02562 * 2 1 3 19 19 C 1.50697 * 119.84211 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47090 * 269.97719 * 1 2 3 21 21 H 1.09003 * 109.47111 * 29.98021 * 1 2 3 22 22 H 1.08999 * 109.47342 * 149.97672 * 1 2 3 23 23 H 1.08003 * 120.07191 * 359.97438 * 3 2 1 24 24 H 1.08007 * 120.07559 * 180.25451 * 7 4 3 25 25 H 1.08995 * 109.47124 * 25.00692 * 9 8 7 26 26 H 1.09007 * 109.46640 * 145.00288 * 9 8 7 27 27 H 0.96999 * 119.99755 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47857 * 269.98182 * 19 18 2 29 29 H 1.09003 * 109.47027 * 29.98829 * 19 18 2 30 30 H 1.09001 * 109.46761 * 149.98003 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5913 1.1939 0.0005 5 6 4.3122 2.4312 0.0000 6 7 4.8842 3.4127 0.0015 7 6 4.2816 -0.0201 0.0001 8 6 3.5809 -1.2081 -0.0003 9 6 4.3241 -2.5192 -0.0003 10 6 4.4646 -3.0171 -1.4156 11 1 4.0569 -2.4415 -2.2336 12 6 5.1136 -4.2074 -1.6664 13 7 5.2367 -4.6417 -2.9017 14 14 5.8181 -5.2032 -0.2518 15 1 4.7910 -6.1544 0.2438 16 1 7.0068 -5.9590 -0.7220 17 1 6.2167 -4.2880 0.8477 18 6 2.1972 -1.1990 -0.0005 19 6 1.4384 -2.5010 -0.0017 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6552 2.1311 -0.0004 24 1 5.3616 -0.0287 0.0047 25 1 5.3132 -2.3760 0.4345 26 1 3.7706 -3.2505 0.5889 27 1 5.6937 -5.4789 -3.0781 28 1 1.2553 -2.8159 1.0256 29 1 0.4866 -2.3664 -0.5156 30 1 2.0246 -3.2625 -0.5161 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260305019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = 17.531143 kcal Electronic energy + Delta-G solvation = -13418.636897 eV Core-core repulsion = 11177.529863 eV Total energy + Delta-G solvation = -2241.107034 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79585 -37.73477 -35.62256 -34.28270 -33.77356 -30.14686 -28.53969 -27.53627 -24.78733 -23.05918 -21.36344 -18.92834 -18.76223 -17.09401 -16.33076 -16.29941 -15.34893 -15.03550 -14.58344 -14.49480 -14.20953 -13.93699 -13.84647 -13.69353 -13.35728 -13.15444 -12.99208 -12.68768 -12.42277 -12.08094 -11.87237 -11.79717 -11.62956 -11.36155 -10.73465 -9.44016 -9.35737 -8.24644 -6.28611 -0.10296 0.52847 1.39783 1.42715 1.52877 1.59091 1.95665 2.39100 2.88074 2.96610 3.10543 3.95678 4.01410 4.15941 4.35328 4.42660 4.68225 4.84131 4.87244 4.95522 5.04067 5.05821 5.14312 5.21873 5.35465 5.40918 5.53354 5.61233 5.64436 5.94865 6.07314 6.32512 6.42674 6.78065 7.34517 8.91575 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.027900 B = 0.009013 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.348691 B = 3105.924420 C = 3741.555433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.075 4.075 4 C -0.048 4.048 5 C 0.286 3.714 6 N -0.468 5.468 7 C -0.085 4.085 8 C -0.064 4.064 9 C 0.020 3.980 10 C -0.508 4.508 11 H 0.031 0.969 12 C 0.010 3.990 13 N -0.949 5.949 14 Si 0.941 3.059 15 H -0.261 1.261 16 H -0.290 1.290 17 H -0.246 1.246 18 C -0.058 4.058 19 C -0.126 4.126 20 H 0.088 0.912 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.156 0.844 24 H 0.122 0.878 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 5.954 9.213 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.095 4.095 4 C -0.051 4.051 5 C -0.027 4.027 6 N -0.144 5.144 7 C -0.106 4.106 8 C -0.064 4.064 9 C -0.017 4.017 10 C -0.546 4.546 11 H 0.050 0.950 12 C -0.187 4.187 13 N -0.590 5.590 14 Si 0.765 3.235 15 H -0.186 1.186 16 H -0.216 1.216 17 H -0.169 1.169 18 C -0.059 4.059 19 C -0.182 4.182 20 H 0.107 0.893 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.173 0.827 24 H 0.140 0.860 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.260 7.347 9.114 14.926 hybrid contribution 0.783 -1.065 -0.132 1.329 sum -8.477 6.282 8.982 13.856 Atomic orbital electron populations 1.20910 0.88130 1.04009 1.03745 1.19952 0.97962 0.91027 1.00107 1.21154 0.90780 0.99294 0.98265 1.15921 0.93065 0.85670 1.10452 1.25839 0.92375 0.92482 0.92046 1.81192 1.09559 1.12337 1.11290 1.21038 1.00030 0.90637 0.98882 1.19910 0.94063 0.95095 0.97321 1.18681 0.95639 0.91517 0.95845 1.21071 1.35821 1.05681 0.92076 0.95048 1.25893 0.96073 0.98675 0.98040 1.70055 1.44721 1.22642 1.21551 0.85787 0.78430 0.79250 0.80054 1.18593 1.21599 1.16929 1.20133 0.92730 0.96526 0.96528 1.21018 1.00152 0.93888 1.03103 0.89315 0.89972 0.90556 0.82657 0.86012 0.95432 0.94072 0.92554 0.89459 0.89408 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.60 71.23 0.68 -1.20 16 2 C -0.09 -2.28 5.87 -19.90 -0.12 -2.39 16 3 C -0.07 -1.85 9.41 22.54 0.21 -1.63 16 4 C -0.05 -1.42 5.73 -21.36 -0.12 -1.54 16 5 C 0.29 8.89 15.33 88.33 1.35 10.25 16 6 N -0.47 -15.90 18.54 19.00 0.35 -15.54 16 7 C -0.09 -2.97 9.38 22.54 0.21 -2.76 16 8 C -0.06 -2.40 5.06 -19.90 -0.10 -2.50 16 9 C 0.02 0.89 3.48 29.10 0.10 0.99 16 10 C -0.51 -27.58 8.86 25.60 0.23 -27.35 16 11 H 0.03 1.92 7.98 -2.91 -0.02 1.90 16 12 C 0.01 0.57 5.47 84.65 0.46 1.03 16 13 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 14 Si 0.94 41.91 27.47 68.60 1.88 43.79 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 18 C -0.06 -1.85 5.89 -19.81 -0.12 -1.97 16 19 C -0.13 -3.65 8.79 71.24 0.63 -3.02 16 20 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 22 H 0.08 1.27 5.93 -2.39 -0.01 1.26 16 23 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 24 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 25 H 0.03 1.19 7.11 -2.39 -0.02 1.18 16 26 H 0.04 1.69 6.40 -2.38 -0.02 1.68 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.08 5.93 -2.39 -0.01 2.07 16 30 H 0.06 2.17 6.13 -2.39 -0.01 2.16 16 Total: -1.00 -64.34 261.86 7.05 -57.29 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.09 Total: 3.93 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.42 Total: -32.10 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: 0.65 Total: -72.92 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.79 kcal Total: -64.34 7.05 -57.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.820 kcal (2) G-P(sol) polarization free energy of solvation -64.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds