Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34639 * 117.00253 * 2 1 4 4 O 1.21512 * 119.99495 * 0.02562 * 3 2 1 5 5 N 1.34764 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.47588 * 134.49431 * 0.02562 * 5 3 2 7 7 C 1.53944 * 86.12054 * 204.64121 * 6 5 3 8 8 C 1.47586 * 134.49585 * 180.02562 * 5 3 2 9 9 H 1.09004 * 113.86667 * 41.04750 * 8 5 3 10 10 C 1.52994 * 113.76910 * 269.66250 * 8 5 3 11 11 O 1.42905 * 109.47164 * 88.50471 * 10 8 5 12 12 C 1.34929 * 116.99984 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.38636 * 119.99824 * 180.27471 * 12 11 10 15 15 N 1.31581 * 120.00073 * 179.72261 * 14 12 11 16 16 Si 1.86800 * 119.99924 * 359.72446 * 14 12 11 17 17 H 1.48500 * 109.47520 * 90.00179 * 16 14 12 18 18 H 1.48504 * 109.47004 * 209.99931 * 16 14 12 19 19 H 1.48502 * 109.47002 * 329.99834 * 16 14 12 20 20 H 1.09005 * 109.47167 * 299.99936 * 1 2 3 21 21 H 1.09003 * 109.47103 * 59.99411 * 1 2 3 22 22 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.08997 * 113.76685 * 90.33724 * 6 5 3 24 24 H 1.09005 * 113.86816 * 318.95473 * 6 5 3 25 25 H 1.08995 * 113.74360 * 222.05075 * 7 6 5 26 26 H 1.08999 * 113.74196 * 90.73802 * 7 6 5 27 27 H 1.08998 * 109.47242 * 328.50112 * 10 8 5 28 28 H 1.09004 * 109.46797 * 208.49929 * 10 8 5 29 29 H 0.96995 * 120.00173 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 -0.0005 6 6 4.4971 0.2729 -0.0016 7 6 5.3639 1.3721 0.6391 8 6 4.3870 2.3756 -0.0002 9 1 4.1164 3.2036 0.6550 10 6 4.8011 2.8329 -1.4002 11 8 3.9000 3.8435 -1.8572 12 6 4.1267 4.3569 -3.0843 13 1 4.9596 4.0016 -3.6729 14 6 3.2940 5.3448 -3.5869 15 7 3.5182 5.8494 -4.7813 16 14 1.8538 5.9598 -2.5686 17 1 2.2931 7.1040 -1.7301 18 1 0.7605 6.3994 -3.4723 19 1 1.3628 4.8648 -1.6938 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 4.8245 -0.0189 -0.9995 24 1 4.3146 -0.5797 0.6525 25 1 6.3746 1.4254 0.2348 26 1 5.3403 1.3701 1.7288 27 1 4.7717 1.9840 -2.0833 28 1 5.8129 3.2369 -1.3660 29 1 2.9355 6.5403 -5.1331 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260340634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -99.886691 kcal Electronic energy + Delta-G solvation = -14748.288095 eV Core-core repulsion = 12058.947428 eV Total energy + Delta-G solvation = -2689.340667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.72885 -40.10011 -38.16282 -37.23147 -34.17219 -31.56603 -29.46979 -28.15641 -26.42111 -24.65624 -23.36278 -20.61360 -19.89006 -18.73296 -18.17265 -18.01774 -17.48490 -16.51024 -16.09070 -15.43156 -15.28874 -14.77508 -14.52380 -14.35933 -13.91911 -13.35241 -13.11413 -12.95807 -12.92568 -12.40251 -12.12358 -11.92798 -11.84059 -11.63250 -11.53592 -11.49148 -10.42384 -9.86862 -8.34341 -6.02474 0.96368 1.28551 1.30969 1.59795 1.72995 2.39227 2.81575 2.99463 3.14524 3.64323 4.04803 4.12074 4.23965 4.28711 4.30907 4.32886 4.55542 4.59594 4.65344 4.83732 4.85861 4.97390 5.24741 5.26083 5.51684 6.08481 6.60334 7.06593 7.17398 7.78894 8.81287 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.028369 B = 0.010478 C = 0.008363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.769236 B = 2671.638917 C = 3347.301554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.370 6.370 3 C 0.652 3.348 4 O -0.614 6.614 5 N -0.634 5.634 6 C 0.105 3.895 7 C -0.108 4.108 8 C 0.145 3.855 9 H 0.080 0.920 10 C 0.068 3.932 11 O -0.353 6.353 12 C -0.354 4.354 13 H 0.061 0.939 14 C -0.005 4.005 15 N -0.947 5.947 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.282 1.282 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.146 0.854 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -14.925 13.290 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.408 3.592 4 O -0.506 6.506 5 N -0.377 5.377 6 C -0.015 4.015 7 C -0.145 4.145 8 C 0.043 3.957 9 H 0.098 0.902 10 C -0.009 4.009 11 O -0.270 6.270 12 C -0.432 4.432 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.594 5.594 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.207 1.207 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.164 0.836 23 H 0.112 0.888 24 H 0.130 0.870 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.096 -14.522 13.324 19.739 hybrid contribution -0.919 0.645 -0.416 1.197 sum 0.177 -13.878 12.908 18.954 Atomic orbital electron populations 1.23480 0.73248 1.05705 1.02028 1.86217 1.25399 1.29720 1.87048 1.18122 0.82988 0.82060 0.76019 1.91014 1.65035 1.36902 1.57601 1.49305 1.00136 1.13606 1.74626 1.23578 0.81345 0.94146 1.02426 1.23499 0.98254 0.90354 1.02416 1.23004 0.85064 0.92250 0.95377 0.90165 1.22670 0.93765 0.90715 0.93776 1.85271 1.53844 1.54823 1.33039 1.20386 1.12729 1.18586 0.91527 0.92145 1.24992 1.00855 0.97183 0.96837 1.69759 1.41312 1.30550 1.17825 0.85350 0.79283 0.78510 0.78397 1.19256 1.20290 1.20733 0.92067 0.93533 0.83597 0.88779 0.86955 0.85776 0.85880 0.94364 0.90852 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.22 10.56 113.37 1.20 2.42 15 2 O -0.37 -11.85 10.55 -55.48 -0.59 -12.44 15 3 C 0.65 26.19 8.92 129.79 1.16 27.35 15 4 O -0.61 -31.06 16.86 19.80 0.33 -30.73 15 5 N -0.63 -21.27 3.42 -944.12 -3.22 -24.49 15 6 C 0.11 2.11 8.50 86.48 0.74 2.84 15 7 C -0.11 -1.85 7.88 31.25 0.25 -1.60 15 8 C 0.15 4.73 4.66 45.09 0.21 4.94 15 9 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 10 C 0.07 2.76 5.92 71.98 0.43 3.19 15 11 O -0.35 -19.92 8.61 -81.98 -0.71 -20.63 15 12 C -0.35 -22.05 10.35 67.92 0.70 -21.35 15 13 H 0.06 3.87 8.00 -2.91 -0.02 3.85 15 14 C 0.00 -0.31 5.49 84.83 0.47 0.16 15 15 N -0.95 -61.41 13.96 21.61 0.30 -61.11 15 16 Si 0.96 52.93 28.62 68.60 1.96 54.90 15 17 H -0.27 -13.97 7.11 99.48 0.71 -13.26 15 18 H -0.28 -14.44 7.11 99.48 0.71 -13.74 15 19 H -0.28 -16.93 7.11 99.48 0.71 -16.23 15 20 H 0.06 1.50 8.14 -2.38 -0.02 1.48 15 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.15 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.09 1.77 7.83 -2.39 -0.02 1.75 15 24 H 0.11 1.62 8.14 -2.38 -0.02 1.60 15 25 H 0.12 1.46 8.10 -2.39 -0.02 1.44 15 26 H 0.12 1.56 8.14 -2.39 -0.02 1.54 15 27 H 0.04 1.53 7.59 -2.39 -0.02 1.51 15 28 H 0.07 2.62 8.14 -2.38 -0.02 2.60 15 29 H 0.27 16.58 8.31 -92.71 -0.77 15.81 15 Total: -1.00 -86.29 262.44 4.36 -81.93 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: 1.13 Total: -5.37 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 5.14 Total: 17.94 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.92 Total: -85.60 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -0.96 Total: -63.79 kcal Atomic # 14 Polarization: 52.93 SS G_CDS: 1.96 Total: 54.90 kcal Total: -86.29 4.36 -81.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.961 kcal (2) G-P(sol) polarization free energy of solvation -86.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds