Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.57343 * 2 1 4 4 C 1.53020 * 109.69046 * 239.65276 * 2 1 3 5 5 C 1.52588 * 109.99445 * 177.07952 * 4 2 1 6 6 C 1.50700 * 109.22217 * 191.00130 * 5 4 2 7 7 H 1.08004 * 119.99696 * 122.05814 * 6 5 4 8 8 C 1.37879 * 120.00740 * 302.04754 * 6 5 4 9 9 N 1.31515 * 119.99339 * 353.76248 * 8 6 5 10 10 Si 1.86794 * 120.00195 * 173.76250 * 8 6 5 11 11 H 1.48497 * 109.47140 * 90.00344 * 10 8 6 12 12 H 1.48504 * 109.47123 * 210.00319 * 10 8 6 13 13 H 1.48496 * 109.47226 * 330.00049 * 10 8 6 14 14 C 1.52998 * 109.22232 * 310.40321 * 5 4 2 15 15 N 1.46907 * 109.46607 * 183.18431 * 14 5 4 16 16 C 1.52582 * 110.68992 * 70.70485 * 5 4 2 17 17 C 1.53099 * 109.95563 * 289.34298 * 16 5 4 18 18 S 1.81744 * 108.83772 * 63.03047 * 17 16 5 19 19 H 1.08995 * 109.46768 * 299.74610 * 1 2 3 20 20 H 1.09004 * 109.46854 * 59.73757 * 1 2 3 21 21 H 1.08999 * 109.47119 * 179.74396 * 1 2 3 22 22 H 1.08997 * 109.33383 * 56.94597 * 4 2 1 23 23 H 1.08999 * 109.41337 * 297.26382 * 4 2 1 24 24 H 0.97003 * 119.99686 * 179.97438 * 9 8 6 25 25 H 1.09000 * 109.47086 * 63.18781 * 14 5 4 26 26 H 1.09000 * 109.47278 * 303.18000 * 14 5 4 27 27 H 1.00904 * 110.99368 * 173.91907 * 15 14 5 28 28 H 1.00899 * 110.99905 * 297.87610 * 15 14 5 29 29 H 1.09002 * 109.39156 * 49.49737 * 16 5 4 30 30 H 1.08997 * 109.38590 * 169.29605 * 16 5 4 31 31 H 1.08998 * 109.57758 * 182.83626 * 17 16 5 32 32 H 1.09001 * 109.57738 * 303.09615 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0457 -0.7279 -1.2433 5 6 3.5698 -0.6693 -1.2878 6 6 4.0455 -1.1451 -2.6362 7 1 4.6499 -0.4982 -3.2547 8 6 3.7094 -2.4065 -3.0803 9 7 3.0795 -3.2389 -2.2804 10 14 4.1488 -2.9328 -4.8178 11 1 5.4942 -3.5614 -4.8193 12 1 3.1448 -3.9113 -5.3075 13 1 4.1567 -1.7443 -5.7080 14 6 4.0247 0.7758 -1.0741 15 7 5.4871 0.8511 -1.1917 16 6 4.1752 -1.5526 -0.2009 17 6 3.9297 -0.9295 1.1758 18 16 2.1390 -0.8630 1.4791 19 1 -0.3633 0.5099 0.8922 20 1 -0.3633 0.5179 -0.8877 21 1 -0.3633 -1.0276 -0.0046 22 1 1.6391 -0.2511 -2.1352 23 1 1.7243 -1.7690 -1.2129 24 1 2.8427 -4.1262 -2.5929 25 1 3.7224 1.1089 -0.0813 26 1 3.5662 1.4162 -1.8276 27 1 5.8041 1.8083 -1.1533 28 1 5.9362 0.2926 -0.4814 29 1 3.7146 -2.5399 -0.2387 30 1 5.2481 -1.6473 -0.3676 31 1 4.4077 -1.5387 1.9430 32 1 4.3437 0.0786 1.1995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -11.032512 kcal Electronic energy + Delta-G solvation = -13629.065125 eV Core-core repulsion = 11522.163430 eV Total energy + Delta-G solvation = -2106.901695 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.85955 -33.16913 -32.41756 -31.06684 -28.30617 -25.36554 -23.69025 -22.92855 -20.87303 -18.12232 -16.31663 -15.95448 -15.12914 -14.49817 -13.97688 -13.75859 -13.32138 -13.09180 -12.60573 -12.47345 -11.70472 -11.61709 -11.13987 -11.02345 -10.94746 -10.69868 -10.59597 -10.08978 -9.98513 -9.34770 -9.21173 -9.15165 -8.47969 -8.25635 -7.72352 -6.88725 -5.89932 -3.93675 2.57995 3.32609 3.35176 3.42354 3.46779 4.50133 5.27776 5.48318 5.54119 5.64673 5.76163 5.89160 5.93849 6.12836 6.21694 6.33722 6.36809 6.43982 6.53265 6.67351 6.85360 6.95616 7.29774 7.58957 7.72828 7.95974 8.01131 8.20388 8.22672 8.55139 9.09415 9.68953 11.12921 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.012765 C = 0.011287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.885832 B = 2193.010112 C = 2480.203252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 H 0.073 0.927 4 C -0.099 4.099 5 C 0.074 3.926 6 C -0.482 4.482 7 H 0.066 0.934 8 C 0.059 3.941 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.070 3.930 15 N -0.832 5.832 16 C -0.104 4.104 17 C -0.078 4.078 18 S -0.301 6.301 19 H 0.050 0.950 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.257 0.743 25 H 0.003 0.997 26 H 0.054 0.946 27 H 0.318 0.682 28 H 0.333 0.667 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 5.486 4.692 7.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.073 3.927 6 C -0.520 4.520 7 H 0.084 0.916 8 C -0.141 4.141 9 N -0.529 5.529 10 Si 0.717 3.283 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.202 1.202 14 C -0.060 4.060 15 N -0.360 5.360 16 C -0.143 4.143 17 C -0.226 4.226 18 S -0.076 6.076 19 H 0.069 0.931 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.118 0.882 24 H 0.067 0.933 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.791 4.582 4.845 6.905 hybrid contribution 0.922 0.543 -0.929 1.417 sum -0.869 5.124 3.916 6.507 Atomic orbital electron populations 1.21597 0.93614 1.02495 1.01066 1.23371 0.97778 1.00234 0.96331 0.90835 1.21886 0.97901 1.02165 0.91889 1.18019 0.90769 0.88618 0.95272 1.21022 1.31187 0.99263 1.00576 0.91614 1.24972 0.95452 0.96681 0.97000 1.69867 1.41511 1.06881 1.34685 0.86649 0.77855 0.78181 0.85578 1.21034 1.21589 1.20162 1.22111 0.87460 1.00318 0.96144 1.58591 1.07046 1.13408 1.56958 1.21879 1.00690 1.02822 0.88936 1.23663 0.92382 1.03025 1.03578 1.86195 1.09472 1.79887 1.32014 0.93138 0.91850 0.91899 0.93281 0.88152 0.93252 0.97909 0.92779 0.87200 0.85455 0.88086 0.92944 0.90105 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.23 37.16 0.34 -1.77 16 2 C -0.05 -0.92 2.66 -26.72 -0.07 -0.99 16 3 H 0.07 1.35 6.21 -51.93 -0.32 1.03 16 4 C -0.10 -2.20 3.56 -26.93 -0.10 -2.29 16 5 C 0.07 1.67 0.29 -156.09 -0.05 1.63 16 6 C -0.48 -12.54 7.50 -34.44 -0.26 -12.80 16 7 H 0.07 1.79 7.53 -52.48 -0.40 1.39 16 8 C 0.06 1.57 5.13 -17.82 -0.09 1.48 16 9 N -0.89 -24.07 9.72 55.43 0.54 -23.53 16 10 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.07 1.39 4.32 -3.82 -0.02 1.37 16 15 N -0.83 -15.29 8.88 -10.37 -0.09 -15.39 16 16 C -0.10 -2.31 3.76 -26.89 -0.10 -2.41 16 17 C -0.08 -1.49 5.95 37.21 0.22 -1.26 16 18 S -0.30 -5.85 21.70 -107.50 -2.33 -8.18 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 22 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 23 H 0.10 2.53 6.40 -51.93 -0.33 2.20 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.00 0.06 4.51 -51.93 -0.23 -0.18 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.32 4.90 9.08 -39.29 -0.36 4.54 16 28 H 0.33 5.88 7.30 -39.29 -0.29 5.60 16 29 H 0.10 2.57 6.35 -51.93 -0.33 2.24 16 30 H 0.05 1.19 7.21 -51.93 -0.37 0.81 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 1.14 5.85 -51.93 -0.30 0.84 16 LS Contribution 251.06 15.07 3.78 3.78 Total: -1.00 -26.69 251.06 -7.84 -34.54 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.60 Total: 9.67 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.12 Total: -17.06 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.45 Total: -38.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -5.85 SS G_CDS: -2.33 Total: -8.18 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.69 -7.84 -34.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.503 kcal (2) G-P(sol) polarization free energy of solvation -26.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds