Wall clock time and date at job start Mon Mar 30 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.57778 * 2 1 4 4 C 1.53106 * 109.57564 * 120.38963 * 2 1 3 5 5 C 1.52411 * 109.89219 * 182.82536 * 4 2 1 6 6 C 1.50701 * 109.26934 * 49.65201 * 5 4 2 7 7 H 1.08003 * 119.99704 * 243.71540 * 6 5 4 8 8 C 1.37871 * 120.00042 * 63.72048 * 6 5 4 9 9 N 1.31521 * 120.00141 * 152.40041 * 8 6 5 10 10 Si 1.86796 * 120.00205 * 332.39835 * 8 6 5 11 11 H 1.48499 * 109.47205 * 58.18194 * 10 8 6 12 12 H 1.48500 * 109.47455 * 178.18793 * 10 8 6 13 13 H 1.48498 * 109.47162 * 298.18634 * 10 8 6 14 14 C 1.52994 * 109.07810 * 168.94901 * 5 4 2 15 15 N 1.46899 * 109.46836 * 185.11386 * 14 5 4 16 16 C 1.52575 * 110.81905 * 289.24002 * 5 4 2 17 17 C 1.53102 * 109.87759 * 70.74834 * 16 5 4 18 18 S 1.81747 * 108.83931 * 297.01751 * 17 16 5 19 19 H 1.09001 * 109.47496 * 180.25510 * 1 2 3 20 20 H 1.08996 * 109.47419 * 300.25264 * 1 2 3 21 21 H 1.08998 * 109.47022 * 60.25369 * 1 2 3 22 22 H 1.08995 * 109.39020 * 302.98285 * 4 2 1 23 23 H 1.08999 * 109.38668 * 62.78202 * 4 2 1 24 24 H 0.97000 * 120.00079 * 179.97438 * 9 8 6 25 25 H 1.08998 * 109.47745 * 305.11378 * 14 5 4 26 26 H 1.09001 * 109.47127 * 65.11848 * 14 5 4 27 27 H 1.00901 * 111.00068 * 173.35780 * 15 14 5 28 28 H 1.00904 * 111.00102 * 297.31158 * 15 14 5 29 29 H 1.08998 * 109.39701 * 310.64216 * 16 5 4 30 30 H 1.09000 * 109.38677 * 190.84113 * 16 5 4 31 31 H 1.08993 * 109.57471 * 56.82774 * 17 16 5 32 32 H 1.09002 * 109.57110 * 177.08483 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0429 -0.7298 1.2444 5 6 3.5653 -0.6734 1.2879 6 6 4.0165 0.7492 1.0788 7 1 4.6016 1.0078 0.2086 8 6 3.6824 1.7206 1.9984 9 7 4.4564 2.7724 2.1545 10 14 2.1304 1.5429 3.0226 11 1 2.1894 0.2760 3.7950 12 1 2.0219 2.6896 3.9599 13 1 0.9461 1.5218 2.1271 14 6 4.0447 -1.1567 2.6580 15 7 5.5012 -0.9910 2.7536 16 6 4.1720 -1.5576 0.2025 17 6 3.9292 -0.9329 -1.1740 18 16 2.1389 -0.8629 -1.4792 19 1 -0.3634 -1.0276 0.0046 20 1 -0.3634 0.5177 0.8877 21 1 -0.3633 0.5099 -0.8922 22 1 1.6368 -0.2532 2.1365 23 1 1.7210 -1.7706 1.2118 24 1 4.2212 3.4560 2.8012 25 1 3.5604 -0.5715 3.4397 26 1 3.7900 -2.2093 2.7815 27 1 5.8287 -1.2008 3.6847 28 1 5.9755 -1.5583 2.0671 29 1 3.7097 -2.5440 0.2389 30 1 5.2444 -1.6542 0.3719 31 1 4.3431 0.0752 -1.1956 32 1 4.4088 -1.5412 -1.9408 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:26 Heat of formation + Delta-G solvation = 9.053099 kcal Electronic energy + Delta-G solvation = -13810.884266 eV Core-core repulsion = 11704.853548 eV Total energy + Delta-G solvation = -2106.030718 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.01938 -33.43241 -32.00890 -31.80748 -28.58832 -25.04490 -24.50915 -22.61770 -20.84222 -18.94781 -16.38682 -15.89906 -15.34142 -14.40839 -14.00538 -13.85709 -13.81784 -13.09248 -12.77509 -12.50846 -12.16995 -11.77240 -11.58956 -11.43599 -11.03480 -10.41925 -10.27921 -10.24258 -10.04614 -9.77887 -9.22840 -8.94817 -8.62855 -8.11925 -7.53930 -6.92391 -6.07224 -3.88075 2.63510 3.23165 3.30476 3.38136 3.42758 4.45199 5.17124 5.37428 5.62269 5.65960 5.69287 5.76583 5.96264 6.06580 6.08904 6.23518 6.25728 6.38610 6.46125 6.51188 6.59382 6.71876 6.77584 6.95435 7.09137 7.26938 7.83719 8.16083 8.33664 8.56257 9.01714 9.64874 11.05945 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.017990 C = 0.013971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.605467 B = 1556.019672 C = 2003.717560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 H 0.110 0.890 4 C -0.116 4.116 5 C 0.040 3.960 6 C -0.495 4.495 7 H 0.074 0.926 8 C 0.094 3.906 9 N -0.869 5.869 10 Si 0.854 3.146 11 H -0.270 1.270 12 H -0.307 1.307 13 H -0.268 1.268 14 C 0.069 3.931 15 N -0.817 5.817 16 C -0.092 4.092 17 C -0.061 4.061 18 S -0.310 6.310 19 H 0.055 0.945 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.260 0.740 25 H 0.067 0.933 26 H -0.010 1.010 27 H 0.319 0.681 28 H 0.326 0.674 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -7.559 -1.614 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 H 0.128 0.872 4 C -0.156 4.156 5 C 0.038 3.962 6 C -0.532 4.532 7 H 0.091 0.909 8 C -0.109 4.109 9 N -0.504 5.504 10 Si 0.686 3.314 11 H -0.198 1.198 12 H -0.236 1.236 13 H -0.195 1.195 14 C -0.062 4.062 15 N -0.344 5.344 16 C -0.131 4.131 17 C -0.209 4.209 18 S -0.084 6.084 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.008 0.992 27 H 0.130 0.870 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.236 -6.979 -2.613 8.571 hybrid contribution -0.189 -0.550 2.004 2.087 sum -4.425 -7.529 -0.609 8.754 Atomic orbital electron populations 1.21727 0.94209 1.01742 1.01841 1.23049 0.96310 1.02938 0.93001 0.87204 1.22126 0.99401 0.98135 0.95891 1.18420 0.89837 0.97096 0.90815 1.20448 1.34235 0.89288 1.09182 0.90854 1.24741 0.95711 0.95659 0.94821 1.70138 1.34347 1.11920 1.34036 0.87863 0.87075 0.75861 0.80603 1.19782 1.23555 1.19482 1.22196 0.88804 0.94880 1.00300 1.58437 1.04965 1.63952 1.07085 1.21535 1.00567 0.97242 0.93804 1.23359 0.92214 1.05599 0.99679 1.86074 1.09701 1.78571 1.34076 0.92623 0.91737 0.92477 0.92749 0.93321 0.93046 0.91468 0.99202 0.87015 0.86120 0.93683 0.91750 0.88120 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.16 37.15 0.34 -2.04 16 2 C -0.02 -0.50 1.96 -26.68 -0.05 -0.55 16 3 H 0.11 2.53 6.20 -51.93 -0.32 2.21 16 4 C -0.12 -2.42 3.25 -26.98 -0.09 -2.51 16 5 C 0.04 0.86 0.33 -156.18 -0.05 0.81 16 6 C -0.50 -12.62 5.72 -34.44 -0.20 -12.82 16 7 H 0.07 2.06 6.05 -52.48 -0.32 1.75 16 8 C 0.09 2.56 5.06 -17.82 -0.09 2.47 16 9 N -0.87 -25.57 13.96 55.43 0.77 -24.79 16 10 Si 0.85 20.61 22.30 -169.99 -3.79 16.81 16 11 H -0.27 -6.27 5.17 56.52 0.29 -5.98 16 12 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 13 H -0.27 -6.11 5.14 56.52 0.29 -5.82 16 14 C 0.07 1.45 5.33 -3.83 -0.02 1.43 16 15 N -0.82 -16.19 8.97 -10.37 -0.09 -16.28 16 16 C -0.09 -1.76 4.63 -26.90 -0.12 -1.89 16 17 C -0.06 -1.14 6.15 37.21 0.23 -0.91 16 18 S -0.31 -5.95 21.70 -107.50 -2.33 -8.28 16 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 20 H 0.06 1.11 6.94 -51.93 -0.36 0.75 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 1.19 2.96 -51.93 -0.15 1.03 16 23 H 0.05 0.94 8.05 -51.93 -0.42 0.53 16 24 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.07 1.54 4.36 -51.93 -0.23 1.32 16 26 H -0.01 -0.19 8.14 -51.93 -0.42 -0.61 16 27 H 0.32 5.53 9.08 -39.29 -0.36 5.18 16 28 H 0.33 5.81 7.21 -39.29 -0.28 5.52 16 29 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.06 1.19 6.31 -51.93 -0.33 0.86 16 31 H 0.10 2.11 5.87 -51.93 -0.30 1.81 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 237.90 15.07 3.59 3.59 Total: -1.00 -28.11 237.90 -6.45 -34.56 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.53 Total: 10.42 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.05 Total: -16.02 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.68 Total: -41.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.79 Total: 16.81 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.33 Total: -8.28 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.11 -6.45 -34.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.611 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds