Wall clock time and date at job start Mon Mar 30 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.57778 * 2 1 4 4 C 1.53106 * 109.57564 * 120.38963 * 2 1 3 5 5 C 1.52411 * 109.89219 * 182.82536 * 4 2 1 6 6 C 1.50701 * 109.26934 * 49.65201 * 5 4 2 7 7 H 1.08003 * 119.99704 * 243.71540 * 6 5 4 8 8 C 1.37871 * 120.00042 * 63.72048 * 6 5 4 9 9 N 1.31521 * 120.00141 * 152.40041 * 8 6 5 10 10 Si 1.86796 * 120.00205 * 332.39835 * 8 6 5 11 11 H 1.48499 * 109.47205 * 58.18194 * 10 8 6 12 12 H 1.48500 * 109.47455 * 178.18793 * 10 8 6 13 13 H 1.48498 * 109.47162 * 298.18634 * 10 8 6 14 14 C 1.52994 * 109.07810 * 168.94901 * 5 4 2 15 15 N 1.46899 * 109.46836 * 185.11386 * 14 5 4 16 16 C 1.52575 * 110.81905 * 289.24002 * 5 4 2 17 17 C 1.53102 * 109.87759 * 70.74834 * 16 5 4 18 18 S 1.81747 * 108.83931 * 297.01751 * 17 16 5 19 19 H 1.09001 * 109.47496 * 180.25510 * 1 2 3 20 20 H 1.08996 * 109.47419 * 300.25264 * 1 2 3 21 21 H 1.08998 * 109.47022 * 60.25369 * 1 2 3 22 22 H 1.08995 * 109.39020 * 302.98285 * 4 2 1 23 23 H 1.08999 * 109.38668 * 62.78202 * 4 2 1 24 24 H 0.97000 * 120.00079 * 179.97438 * 9 8 6 25 25 H 1.08998 * 109.47745 * 305.11378 * 14 5 4 26 26 H 1.09001 * 109.47127 * 65.11848 * 14 5 4 27 27 H 1.00901 * 111.00068 * 173.35780 * 15 14 5 28 28 H 1.00904 * 111.00102 * 297.31158 * 15 14 5 29 29 H 1.08998 * 109.39701 * 310.64216 * 16 5 4 30 30 H 1.09000 * 109.38677 * 190.84113 * 16 5 4 31 31 H 1.08993 * 109.57471 * 56.82774 * 17 16 5 32 32 H 1.09002 * 109.57110 * 177.08483 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0429 -0.7298 1.2444 5 6 3.5653 -0.6734 1.2879 6 6 4.0165 0.7492 1.0788 7 1 4.6016 1.0078 0.2086 8 6 3.6824 1.7206 1.9984 9 7 4.4564 2.7724 2.1545 10 14 2.1304 1.5429 3.0226 11 1 2.1894 0.2760 3.7950 12 1 2.0219 2.6896 3.9599 13 1 0.9461 1.5218 2.1271 14 6 4.0447 -1.1567 2.6580 15 7 5.5012 -0.9910 2.7536 16 6 4.1720 -1.5576 0.2025 17 6 3.9292 -0.9329 -1.1740 18 16 2.1389 -0.8629 -1.4792 19 1 -0.3634 -1.0276 0.0046 20 1 -0.3634 0.5177 0.8877 21 1 -0.3633 0.5099 -0.8922 22 1 1.6368 -0.2532 2.1365 23 1 1.7210 -1.7706 1.2118 24 1 4.2212 3.4560 2.8012 25 1 3.5604 -0.5715 3.4397 26 1 3.7900 -2.2093 2.7815 27 1 5.8287 -1.2008 3.6847 28 1 5.9755 -1.5583 2.0671 29 1 3.7097 -2.5440 0.2389 30 1 5.2444 -1.6542 0.3719 31 1 4.3431 0.0752 -1.1956 32 1 4.4088 -1.5412 -1.9408 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:25 Heat of formation + Delta-G solvation = -11.065606 kcal Electronic energy + Delta-G solvation = -13811.756679 eV Core-core repulsion = 11704.853548 eV Total energy + Delta-G solvation = -2106.903130 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70162 -34.98593 -34.04323 -33.35571 -30.20318 -26.87138 -26.20033 -24.20066 -22.40942 -20.75887 -18.10384 -17.72078 -16.97252 -16.12723 -15.64324 -15.57035 -15.39468 -14.85671 -14.31407 -14.13883 -13.91808 -13.36027 -13.19511 -12.95276 -12.65039 -12.16449 -12.00679 -11.87728 -11.82181 -11.49619 -11.03071 -10.62765 -10.33944 -10.09983 -9.09473 -8.46672 -8.16258 -5.97191 1.10216 1.30884 1.39444 1.47395 1.79545 2.44546 3.16379 3.81243 4.08674 4.11077 4.19791 4.21824 4.47828 4.53315 4.61204 4.66917 4.76022 4.84718 4.90162 4.97212 5.07613 5.16526 5.20492 5.33134 5.42363 5.63763 5.90774 6.45146 6.66265 6.90755 6.97864 7.57633 9.00014 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.017990 C = 0.013971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.605467 B = 1556.019672 C = 2003.717560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.032 4.032 3 H 0.073 0.927 4 C -0.116 4.116 5 C 0.033 3.967 6 C -0.471 4.471 7 H 0.037 0.963 8 C 0.044 3.956 9 N -0.925 5.925 10 Si 0.900 3.100 11 H -0.250 1.250 12 H -0.327 1.327 13 H -0.249 1.249 14 C 0.071 3.929 15 N -0.836 5.836 16 C -0.088 4.088 17 C -0.062 4.062 18 S -0.293 6.293 19 H 0.074 0.926 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.254 0.746 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.334 0.666 28 H 0.338 0.662 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -10.051 -1.848 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 H 0.092 0.908 4 C -0.154 4.154 5 C 0.032 3.968 6 C -0.508 4.508 7 H 0.055 0.945 8 C -0.155 4.155 9 N -0.564 5.564 10 Si 0.731 3.269 11 H -0.177 1.177 12 H -0.258 1.258 13 H -0.174 1.174 14 C -0.060 4.060 15 N -0.367 5.367 16 C -0.127 4.127 17 C -0.210 4.210 18 S -0.067 6.067 19 H 0.093 0.907 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.501 -9.514 -2.856 11.355 hybrid contribution 0.286 0.199 1.974 2.005 sum -5.215 -9.316 -0.882 10.712 Atomic orbital electron populations 1.21712 0.91835 1.03178 1.02379 1.23003 0.98414 1.01023 0.93641 0.90849 1.22085 0.98236 0.99473 0.95654 1.18499 0.90916 0.94917 0.92474 1.20600 1.31833 0.91464 1.06890 0.94530 1.25342 0.97995 0.95567 0.96545 1.70270 1.36530 1.13501 1.36104 0.87109 0.84633 0.75728 0.79421 1.17673 1.25758 1.17429 1.22064 0.89191 0.96028 0.98726 1.58355 1.04798 1.64922 1.08588 1.21492 1.00932 0.97564 0.92719 1.23350 0.92458 1.04445 1.00775 1.85990 1.09385 1.77797 1.33522 0.90675 0.91706 0.91538 0.93628 0.90953 0.93705 0.93591 0.96366 0.85426 0.84798 0.91418 0.91271 0.91120 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.16 71.98 0.66 -3.54 16 2 C -0.03 -1.24 1.96 30.63 0.06 -1.18 16 3 H 0.07 3.35 6.20 -2.39 -0.01 3.34 16 4 C -0.12 -4.46 3.25 30.43 0.10 -4.36 16 5 C 0.03 1.37 0.33 -53.27 -0.02 1.35 16 6 C -0.47 -24.16 5.72 25.60 0.15 -24.02 16 7 H 0.04 2.13 6.05 -2.91 -0.02 2.11 16 8 C 0.04 2.43 5.06 84.65 0.43 2.86 16 9 N -0.93 -56.45 13.96 21.45 0.30 -56.15 16 10 Si 0.90 42.53 22.30 68.60 1.53 44.06 16 11 H -0.25 -10.97 5.17 99.48 0.51 -10.46 16 12 H -0.33 -16.49 7.11 99.48 0.71 -15.79 16 13 H -0.25 -10.82 5.14 99.48 0.51 -10.31 16 14 C 0.07 2.79 5.33 86.30 0.46 3.25 16 15 N -0.84 -31.71 8.97 -186.73 -1.68 -33.38 16 16 C -0.09 -3.11 4.63 30.49 0.14 -2.97 16 17 C -0.06 -2.23 6.15 72.02 0.44 -1.79 16 18 S -0.29 -10.48 21.70 -56.49 -1.23 -11.71 16 19 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 20 H 0.06 2.04 6.94 -2.39 -0.02 2.03 16 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.85 2.96 -2.39 -0.01 1.85 16 23 H 0.07 2.48 8.05 -2.39 -0.02 2.46 16 24 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.05 2.00 4.36 -2.39 -0.01 1.99 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.33 10.96 9.08 -89.69 -0.81 10.14 16 28 H 0.34 11.31 7.21 -89.69 -0.65 10.66 16 29 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 30 H 0.07 2.37 6.31 -2.39 -0.02 2.36 16 31 H 0.07 2.97 5.87 -2.39 -0.01 2.96 16 32 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -60.74 237.90 0.64 -60.11 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.71 Total: 27.48 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 2.42 Total: -30.40 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -1.38 Total: -89.54 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.53 Total: 44.06 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.23 Total: -11.71 kcal Total: -60.74 0.64 -60.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.041 kcal (2) G-P(sol) polarization free energy of solvation -60.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds