Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34725 * 126.04172 * 2 1 4 4 N 1.36648 * 109.70793 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.59277 * 180.02562 * 4 3 2 6 6 C 1.38092 * 108.81727 * 0.02562 * 4 3 2 7 7 C 1.38207 * 133.26638 * 179.97438 * 6 4 3 8 8 C 1.40590 * 119.57991 * 180.02562 * 7 6 4 9 9 C 1.41020 * 119.97259 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99887 * 334.78573 * 9 8 7 11 11 C 1.39887 * 120.00406 * 154.79015 * 9 8 7 12 12 N 1.30879 * 119.99869 * 342.02856 * 11 9 8 13 13 Si 1.86799 * 120.00350 * 162.02906 * 11 9 8 14 14 H 1.48502 * 109.47264 * 94.63783 * 13 11 9 15 15 H 1.48496 * 109.47541 * 214.63856 * 13 11 9 16 16 H 1.48503 * 109.46919 * 334.64031 * 13 11 9 17 17 C 1.41259 * 120.06008 * 359.97438 * 8 7 6 18 18 C 1.35728 * 120.33601 * 359.97438 * 17 8 7 19 19 C 1.40520 * 120.14875 * 359.74651 * 18 17 8 20 20 H 1.09003 * 109.47107 * 90.02244 * 1 2 3 21 21 H 1.08999 * 109.46679 * 330.02791 * 1 2 3 22 22 H 1.08990 * 109.47421 * 210.02385 * 1 2 3 23 23 H 1.08001 * 125.14369 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.46986 * 90.02296 * 5 4 3 25 25 H 1.09000 * 109.47450 * 210.02185 * 5 4 3 26 26 H 1.08998 * 109.47048 * 330.02793 * 5 4 3 27 27 H 1.08000 * 120.21042 * 0.02562 * 7 6 4 28 28 H 0.96998 * 120.00237 * 180.02562 * 12 11 9 29 29 H 1.07999 * 119.83337 * 180.02562 * 17 8 7 30 30 H 1.07997 * 119.92548 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0894 0.0000 4 7 3.6110 0.7051 -0.0006 5 6 4.7642 1.6085 -0.0002 6 6 3.6709 -0.6746 -0.0015 7 6 4.7173 -1.5773 -0.0029 8 6 4.4442 -2.9564 -0.0042 9 6 5.5056 -3.8849 -0.0050 10 1 6.4693 -3.6030 -0.4031 11 6 5.3106 -5.1708 0.5098 12 7 4.2934 -5.4133 1.2970 13 14 6.5017 -6.5421 0.0738 14 1 7.5385 -6.6521 1.1313 15 1 5.7624 -7.8258 -0.0297 16 1 7.1513 -6.2387 -1.2266 17 6 3.1074 -3.4130 -0.0035 18 6 2.0801 -2.5260 -0.0012 19 6 2.3400 -1.1450 0.0060 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8903 0.5134 22 1 -0.3634 -0.8897 0.5141 23 1 1.9514 2.1117 -0.0004 24 1 5.0508 1.8315 1.0276 25 1 5.5989 1.1325 -0.5149 26 1 4.5012 2.5337 -0.5129 27 1 5.7385 -1.2256 -0.0029 28 1 4.1583 -6.3049 1.6542 29 1 2.9018 -4.4732 -0.0041 30 1 1.0606 -2.8824 -0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260387020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = 44.840138 kcal Electronic energy + Delta-G solvation = -13681.604765 eV Core-core repulsion = 11441.681938 eV Total energy + Delta-G solvation = -2239.922827 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11777 -36.05575 -33.40700 -32.64310 -29.20091 -28.95158 -27.45618 -24.93496 -23.86165 -20.95178 -20.17734 -18.38543 -17.04766 -15.61335 -15.17906 -14.87867 -14.48133 -13.70885 -12.88018 -12.81118 -12.75000 -12.34285 -12.05313 -11.93576 -11.63443 -11.36515 -11.21905 -11.05393 -10.67151 -10.34253 -10.03036 -9.82348 -9.28954 -9.01909 -8.19339 -6.88832 -6.82997 -6.37640 -4.26676 2.50433 2.99088 3.07438 3.13223 3.33553 3.79717 3.83812 3.94562 4.70188 5.32636 5.62651 5.69935 5.80424 5.85055 5.95432 6.03345 6.26453 6.28136 6.47137 6.68513 6.92649 7.02711 7.11583 7.16173 7.33270 7.49149 7.82566 8.06958 8.12888 8.19198 8.36231 8.53290 8.64732 8.92306 9.03213 10.17724 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.008399 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.393591 B = 3332.741065 C = 3883.288796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.153 4.153 3 C -0.027 4.027 4 N -0.498 5.498 5 C 0.093 3.907 6 C 0.140 3.860 7 C -0.276 4.276 8 C 0.136 3.864 9 C -0.458 4.458 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.791 5.791 13 Si 0.908 3.092 14 H -0.271 1.271 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.148 4.148 18 C -0.078 4.078 19 C -0.194 4.194 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.143 0.857 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.281 0.719 29 H 0.120 0.880 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 6.131 -1.691 6.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.161 4.161 3 C -0.150 4.150 4 N -0.184 5.184 5 C -0.050 4.050 6 C 0.035 3.965 7 C -0.300 4.300 8 C 0.132 3.868 9 C -0.487 4.487 10 H 0.096 0.904 11 C -0.142 4.142 12 N -0.416 5.416 13 Si 0.732 3.268 14 H -0.196 1.196 15 H -0.200 1.200 16 H -0.184 1.184 17 C -0.167 4.167 18 C -0.097 4.097 19 C -0.198 4.198 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.160 0.840 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.498 6.186 -1.543 6.549 hybrid contribution 0.636 -0.516 -0.023 0.820 sum -0.862 5.670 -1.566 5.945 Atomic orbital electron populations 1.20012 0.91525 1.00862 1.00379 1.19084 0.94115 0.92300 1.10646 1.21021 0.82493 0.97621 1.13819 1.43566 1.04809 1.04630 1.65435 1.21609 0.88568 0.93220 1.01554 1.18198 0.95732 0.81060 1.01479 1.19659 0.94251 0.91776 1.24280 1.17283 0.92632 0.90218 0.86621 1.19480 0.98310 0.95570 1.35365 0.90397 1.25929 0.95820 0.99828 0.92617 1.69866 1.27060 1.22996 1.21670 0.86308 0.80570 0.79760 0.80144 1.19582 1.19982 1.18403 1.21004 0.92228 0.99029 1.04444 1.19939 0.97379 0.91072 1.01336 1.17719 0.91673 0.92794 1.17598 0.93034 0.93293 0.92552 0.83980 0.92754 0.90864 0.91452 0.89484 0.90811 0.86264 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.37 36.01 0.37 -0.79 16 2 C -0.15 -3.21 6.14 -104.59 -0.64 -3.85 16 3 C -0.03 -0.52 11.24 -16.65 -0.19 -0.70 16 4 N -0.50 -10.29 3.20 -121.73 -0.39 -10.68 16 5 C 0.09 1.44 11.08 59.84 0.66 2.11 16 6 C 0.14 3.45 6.81 -83.95 -0.57 2.88 16 7 C -0.28 -7.18 9.72 -38.71 -0.38 -7.56 16 8 C 0.14 3.73 5.57 -106.81 -0.59 3.14 16 9 C -0.46 -12.26 9.01 -37.91 -0.34 -12.61 16 10 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 11 C 0.08 1.91 5.12 -17.34 -0.09 1.83 16 12 N -0.79 -20.46 10.98 55.54 0.61 -19.85 16 13 Si 0.91 18.59 29.60 -169.99 -5.03 13.55 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 C -0.15 -3.94 8.59 -39.33 -0.34 -4.28 16 18 C -0.08 -1.94 10.03 -39.62 -0.40 -2.34 16 19 C -0.19 -4.77 6.13 -106.65 -0.65 -5.42 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 29 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 30 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 260.29 15.07 3.92 3.92 Total: -1.00 -29.58 260.29 -7.72 -37.30 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.68 Total: 3.35 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -3.15 Total: -27.60 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.22 Total: -30.53 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.58 -7.72 -37.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.143 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds