Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34725 * 126.04172 * 2 1 4 4 N 1.36648 * 109.70793 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.59277 * 180.02562 * 4 3 2 6 6 C 1.38092 * 108.81727 * 0.02562 * 4 3 2 7 7 C 1.38207 * 133.26638 * 179.97438 * 6 4 3 8 8 C 1.40590 * 119.57991 * 180.02562 * 7 6 4 9 9 C 1.41020 * 119.97259 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99887 * 334.78573 * 9 8 7 11 11 C 1.39887 * 120.00406 * 154.79015 * 9 8 7 12 12 N 1.30879 * 119.99869 * 342.02856 * 11 9 8 13 13 Si 1.86799 * 120.00350 * 162.02906 * 11 9 8 14 14 H 1.48502 * 109.47264 * 94.63783 * 13 11 9 15 15 H 1.48496 * 109.47541 * 214.63856 * 13 11 9 16 16 H 1.48503 * 109.46919 * 334.64031 * 13 11 9 17 17 C 1.41259 * 120.06008 * 359.97438 * 8 7 6 18 18 C 1.35728 * 120.33601 * 359.97438 * 17 8 7 19 19 C 1.40520 * 120.14875 * 359.74651 * 18 17 8 20 20 H 1.09003 * 109.47107 * 90.02244 * 1 2 3 21 21 H 1.08999 * 109.46679 * 330.02791 * 1 2 3 22 22 H 1.08990 * 109.47421 * 210.02385 * 1 2 3 23 23 H 1.08001 * 125.14369 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.46986 * 90.02296 * 5 4 3 25 25 H 1.09000 * 109.47450 * 210.02185 * 5 4 3 26 26 H 1.08998 * 109.47048 * 330.02793 * 5 4 3 27 27 H 1.08000 * 120.21042 * 0.02562 * 7 6 4 28 28 H 0.96998 * 120.00237 * 180.02562 * 12 11 9 29 29 H 1.07999 * 119.83337 * 180.02562 * 17 8 7 30 30 H 1.07997 * 119.92548 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0894 0.0000 4 7 3.6110 0.7051 -0.0006 5 6 4.7642 1.6085 -0.0002 6 6 3.6709 -0.6746 -0.0015 7 6 4.7173 -1.5773 -0.0029 8 6 4.4442 -2.9564 -0.0042 9 6 5.5056 -3.8849 -0.0050 10 1 6.4693 -3.6030 -0.4031 11 6 5.3106 -5.1708 0.5098 12 7 4.2934 -5.4133 1.2970 13 14 6.5017 -6.5421 0.0738 14 1 7.5385 -6.6521 1.1313 15 1 5.7624 -7.8258 -0.0297 16 1 7.1513 -6.2387 -1.2266 17 6 3.1074 -3.4130 -0.0035 18 6 2.0801 -2.5260 -0.0012 19 6 2.3400 -1.1450 0.0060 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 0.8903 0.5134 22 1 -0.3634 -0.8897 0.5141 23 1 1.9514 2.1117 -0.0004 24 1 5.0508 1.8315 1.0276 25 1 5.5989 1.1325 -0.5149 26 1 4.5012 2.5337 -0.5129 27 1 5.7385 -1.2256 -0.0029 28 1 4.1583 -6.3049 1.6542 29 1 2.9018 -4.4732 -0.0041 30 1 1.0606 -2.8824 -0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260387020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = 29.259919 kcal Electronic energy + Delta-G solvation = -13682.280374 eV Core-core repulsion = 11441.681938 eV Total energy + Delta-G solvation = -2240.598436 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81785 -37.92478 -35.17679 -34.29283 -31.07261 -30.60275 -29.01290 -26.77652 -25.37628 -22.79690 -22.01826 -20.11095 -18.85949 -17.23459 -17.01179 -16.68393 -15.97572 -15.44563 -14.59891 -14.51104 -14.04086 -14.03421 -13.62244 -13.46818 -13.18418 -12.89903 -12.76371 -12.73165 -12.46389 -11.98718 -11.86014 -11.59916 -11.17043 -10.90234 -9.99721 -8.76285 -8.69658 -8.13571 -6.24760 0.69908 1.24958 1.39072 1.50380 1.55685 2.10592 2.21329 2.33280 2.80711 3.77062 4.09678 4.25526 4.34278 4.50051 4.62491 4.68597 4.73890 4.83526 4.99367 5.05228 5.11141 5.18924 5.26643 5.41932 5.51151 5.69707 5.95294 6.13752 6.22959 6.38585 6.48106 6.69704 6.93009 6.95320 7.09195 8.33195 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.008399 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.393591 B = 3332.741065 C = 3883.288796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.183 4.183 3 C -0.002 4.002 4 N -0.500 5.500 5 C 0.084 3.916 6 C 0.112 3.888 7 C -0.290 4.290 8 C 0.103 3.897 9 C -0.497 4.497 10 H 0.074 0.926 11 C 0.036 3.964 12 N -0.824 5.824 13 Si 0.985 3.015 14 H -0.262 1.262 15 H -0.263 1.263 16 H -0.259 1.259 17 C -0.172 4.172 18 C -0.083 4.083 19 C -0.214 4.214 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.194 0.806 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.290 0.710 29 H 0.107 0.893 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 7.937 -1.877 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.191 4.191 3 C -0.125 4.125 4 N -0.185 5.185 5 C -0.057 4.057 6 C 0.006 3.994 7 C -0.314 4.314 8 C 0.100 3.900 9 C -0.526 4.526 10 H 0.093 0.907 11 C -0.179 4.179 12 N -0.450 5.450 13 Si 0.805 3.195 14 H -0.186 1.186 15 H -0.187 1.187 16 H -0.183 1.183 17 C -0.192 4.192 18 C -0.102 4.102 19 C -0.218 4.218 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.067 0.933 23 H 0.211 0.789 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.990 8.027 -1.726 8.448 hybrid contribution 0.709 -0.835 0.048 1.096 sum -1.280 7.192 -1.677 7.495 Atomic orbital electron populations 1.20043 0.88598 1.02050 1.01552 1.19584 0.96406 0.91207 1.11875 1.21862 0.81470 0.99523 1.09657 1.43968 1.06893 1.03585 1.64074 1.21960 0.86993 0.93681 1.03049 1.18335 0.95487 0.83308 1.02240 1.19761 0.94846 0.91967 1.24796 1.17622 0.93311 0.91225 0.87889 1.19700 0.98319 0.97219 1.37371 0.90738 1.26803 0.97719 1.01683 0.91729 1.69913 1.28729 1.24038 1.22283 0.85159 0.78133 0.76382 0.79805 1.18636 1.18741 1.18289 1.20952 0.92753 0.98749 1.06700 1.20185 0.97811 0.91659 1.00529 1.18240 0.92937 0.93578 1.17029 0.91791 0.90255 0.93263 0.78891 0.91380 0.91383 0.87305 0.89515 0.89966 0.87554 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 10.37 71.24 0.74 -1.21 16 2 C -0.18 -7.21 6.14 -19.84 -0.12 -7.33 16 3 C 0.00 -0.06 11.24 83.14 0.93 0.87 16 4 N -0.50 -19.46 3.20 -539.04 -1.72 -21.18 16 5 C 0.08 2.34 11.08 127.77 1.42 3.76 16 6 C 0.11 5.56 6.81 38.87 0.26 5.83 16 7 C -0.29 -15.69 9.72 22.84 0.22 -15.47 16 8 C 0.10 5.95 5.57 -21.28 -0.12 5.83 16 9 C -0.50 -27.95 9.01 23.35 0.21 -27.74 16 10 H 0.07 4.05 7.91 -2.91 -0.02 4.02 16 11 C 0.04 1.85 5.12 85.23 0.44 2.29 16 12 N -0.82 -44.16 10.98 21.82 0.24 -43.93 16 13 Si 0.99 38.84 29.60 68.60 2.03 40.87 16 14 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 17 C -0.17 -9.65 8.59 22.43 0.19 -9.45 16 18 C -0.08 -4.23 10.03 22.24 0.22 -4.01 16 19 C -0.21 -10.48 6.13 -21.18 -0.13 -10.61 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.19 4.65 8.06 -2.91 -0.02 4.63 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 29 H 0.11 6.07 6.17 -2.91 -0.02 6.06 16 30 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -66.93 260.29 5.94 -60.99 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.12 Total: 20.49 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 4.27 Total: -57.24 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -1.48 Total: -65.11 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.93 5.94 -60.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260387020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.251 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds