Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47251 * 305.00182 * 10 9 7 12 12 N 1.46900 * 109.47083 * 64.99908 * 10 9 7 13 13 C 1.53001 * 109.47148 * 184.99859 * 10 9 7 14 14 H 1.09000 * 109.39099 * 60.20237 * 13 10 9 15 15 C 1.52588 * 109.38730 * 179.97438 * 13 10 9 16 16 C 1.52579 * 110.72268 * 190.82405 * 15 13 10 17 17 C 1.53096 * 109.96039 * 289.32575 * 16 15 13 18 18 S 1.81753 * 108.84053 * 63.02381 * 17 16 15 19 19 C 1.53090 * 109.39070 * 300.49202 * 13 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.00897 * 111.00471 * 60.00211 * 12 10 9 24 24 H 1.00908 * 111.00163 * 183.95368 * 12 10 9 25 25 H 1.08992 * 109.22446 * 311.14223 * 15 13 10 26 26 H 1.08994 * 109.22430 * 70.55024 * 15 13 10 27 27 H 1.09001 * 109.39438 * 49.47283 * 16 15 13 28 28 H 1.08998 * 109.38907 * 169.17665 * 16 15 13 29 29 H 1.08997 * 109.58204 * 182.83622 * 17 16 15 30 30 H 1.09006 * 109.57230 * 303.22371 * 17 16 15 31 31 H 1.09001 * 109.58107 * 296.63573 * 19 13 10 32 32 H 1.09001 * 109.57317 * 57.02042 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 1 2.9261 -3.5534 -0.8563 12 7 3.0130 -3.6567 1.2401 13 6 1.4838 -4.9833 -0.1379 14 1 0.9174 -4.9873 -1.0692 15 6 2.4770 -6.1416 -0.1447 16 6 1.7846 -7.4443 -0.5340 17 6 0.8585 -7.9019 0.5960 18 16 -0.4434 -6.6552 0.8291 19 6 0.5192 -5.1283 1.0420 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 2.4039 -3.7563 2.0383 24 1 3.7207 -4.3760 1.2335 25 1 3.2710 -5.9293 -0.8605 26 1 2.9097 -6.2492 0.8499 27 1 1.1993 -7.2864 -1.4399 28 1 2.5358 -8.2120 -0.7195 29 1 0.4058 -8.8578 0.3328 30 1 1.4314 -8.0082 1.5172 31 1 1.0851 -5.1805 1.9722 32 1 -0.1549 -4.2722 1.0700 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -26.566118 kcal Electronic energy + Delta-G solvation = -12908.143556 eV Core-core repulsion = 10800.568273 eV Total energy + Delta-G solvation = -2107.575283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.22656 -34.43348 -32.41459 -30.09300 -28.34422 -27.17000 -24.58053 -22.69103 -20.66142 -18.88122 -16.89442 -15.98426 -15.41654 -14.88707 -14.61270 -14.18903 -13.75733 -13.59492 -13.06974 -12.81623 -12.52795 -11.95796 -11.34866 -11.24988 -11.14382 -10.82649 -10.66573 -10.57400 -10.36439 -10.19158 -9.52453 -9.21724 -9.00737 -8.28136 -7.89730 -7.46044 -5.90317 -3.88415 1.93107 2.70013 3.37869 3.45275 3.50952 4.54886 4.68765 4.77782 4.96100 5.08435 5.27975 5.33276 5.45150 5.49755 5.54003 5.65613 5.81356 5.99163 6.02845 6.10141 6.21066 6.43420 6.48016 6.90169 7.55864 7.71056 8.01370 8.11199 8.19199 8.56362 9.18109 9.73690 11.21549 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055117 B = 0.007229 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.891822 B = 3872.414126 C = 4167.837040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.049 3.951 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.106 3.894 11 H 0.071 0.929 12 N -0.826 5.826 13 C -0.125 4.125 14 H 0.082 0.918 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.081 4.081 18 S -0.283 6.283 19 C -0.067 4.067 20 H 0.257 0.743 21 H 0.017 0.983 22 H 0.019 0.981 23 H 0.331 0.669 24 H 0.318 0.682 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -14.509 0.800 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.531 4.531 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.008 4.008 11 H 0.089 0.911 12 N -0.354 5.354 13 C -0.148 4.148 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.159 4.159 17 C -0.229 4.229 18 S -0.056 6.056 19 C -0.215 4.215 20 H 0.067 0.933 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.145 0.855 24 H 0.129 0.871 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.117 -13.801 0.622 13.977 hybrid contribution 1.244 0.110 0.198 1.265 sum 3.362 -13.691 0.820 14.122 Atomic orbital electron populations 1.69975 1.05984 1.26217 1.52185 1.25031 0.94804 0.99190 0.95997 0.86548 0.80197 0.84021 0.77273 1.19797 1.21369 1.21297 1.21213 0.93380 0.90223 1.48292 0.92045 1.19191 0.93144 0.91459 0.97060 1.21721 0.95093 0.92157 0.91792 0.91098 1.58789 1.18081 1.54214 1.04343 1.22266 0.96605 0.97542 0.98343 0.89949 1.21602 0.98709 0.94261 1.01663 1.21708 0.98462 0.97579 0.98128 1.23395 0.98416 0.99441 1.01648 1.86856 1.17185 1.05953 1.95595 1.23630 1.00775 0.96246 1.00833 0.93333 0.96493 0.96286 0.85532 0.87065 0.91097 0.92369 0.90675 0.91395 0.88394 0.90386 0.90613 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.49 -13.81 8.84 -34.44 -0.30 -14.12 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.03 0.71 4.11 -27.89 -0.11 0.59 16 10 C 0.11 2.01 2.53 -67.72 -0.17 1.84 16 11 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 12 N -0.83 -14.59 8.80 -4.67 -0.04 -14.63 16 13 C -0.13 -1.96 1.92 -90.78 -0.17 -2.13 16 14 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 15 C -0.12 -1.55 4.29 -27.16 -0.12 -1.67 16 16 C -0.12 -1.32 5.75 -26.90 -0.15 -1.47 16 17 C -0.08 -0.91 6.45 37.21 0.24 -0.67 16 18 S -0.28 -4.17 22.33 -107.50 -2.40 -6.57 16 19 C -0.07 -1.05 5.03 37.20 0.19 -0.87 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.44 6.63 -51.93 -0.34 0.10 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.33 5.68 7.25 -39.29 -0.29 5.40 16 24 H 0.32 4.68 7.65 -39.29 -0.30 4.38 16 25 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.06 0.69 7.25 -51.93 -0.38 0.31 16 27 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 1.12 6.85 -51.93 -0.36 0.76 16 32 H 0.12 2.17 6.38 -51.93 -0.33 1.84 16 LS Contribution 262.61 15.07 3.96 3.96 Total: -1.00 -29.83 262.61 -8.38 -38.21 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.90 Total: 5.59 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.71 Total: -17.17 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.70 Total: -41.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.40 Total: -6.57 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.83 -8.38 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.646 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds