Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47251 * 305.00182 * 10 9 7 12 12 N 1.46900 * 109.47083 * 64.99908 * 10 9 7 13 13 C 1.53001 * 109.47148 * 184.99859 * 10 9 7 14 14 H 1.09000 * 109.39099 * 60.20237 * 13 10 9 15 15 C 1.52588 * 109.38730 * 179.97438 * 13 10 9 16 16 C 1.52579 * 110.72268 * 190.82405 * 15 13 10 17 17 C 1.53096 * 109.96039 * 289.32575 * 16 15 13 18 18 S 1.81753 * 108.84053 * 63.02381 * 17 16 15 19 19 C 1.53090 * 109.39070 * 300.49202 * 13 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.00897 * 111.00471 * 60.00211 * 12 10 9 24 24 H 1.00908 * 111.00163 * 183.95368 * 12 10 9 25 25 H 1.08992 * 109.22446 * 311.14223 * 15 13 10 26 26 H 1.08994 * 109.22430 * 70.55024 * 15 13 10 27 27 H 1.09001 * 109.39438 * 49.47283 * 16 15 13 28 28 H 1.08998 * 109.38907 * 169.17665 * 16 15 13 29 29 H 1.08997 * 109.58204 * 182.83622 * 17 16 15 30 30 H 1.09006 * 109.57230 * 303.22371 * 17 16 15 31 31 H 1.09001 * 109.58107 * 296.63573 * 19 13 10 32 32 H 1.09001 * 109.57317 * 57.02042 * 19 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 1 2.9261 -3.5534 -0.8563 12 7 3.0130 -3.6567 1.2401 13 6 1.4838 -4.9833 -0.1379 14 1 0.9174 -4.9873 -1.0692 15 6 2.4770 -6.1416 -0.1447 16 6 1.7846 -7.4443 -0.5340 17 6 0.8585 -7.9019 0.5960 18 16 -0.4434 -6.6552 0.8291 19 6 0.5192 -5.1283 1.0420 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 2.4039 -3.7563 2.0383 24 1 3.7207 -4.3760 1.2335 25 1 3.2710 -5.9293 -0.8605 26 1 2.9097 -6.2492 0.8499 27 1 1.1993 -7.2864 -1.4399 28 1 2.5358 -8.2120 -0.7195 29 1 0.4058 -8.8578 0.3328 30 1 1.4314 -8.0082 1.5172 31 1 1.0851 -5.1805 1.9722 32 1 -0.1549 -4.2722 1.0700 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -45.925064 kcal Electronic energy + Delta-G solvation = -12908.983023 eV Core-core repulsion = 10800.568273 eV Total energy + Delta-G solvation = -2108.414750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56706 -35.81612 -34.38227 -31.38010 -30.25350 -28.28162 -26.34460 -24.16275 -21.92738 -20.35008 -18.56360 -17.67199 -16.84865 -16.47778 -15.98391 -15.55321 -15.14760 -14.87177 -14.35766 -14.14442 -13.86953 -13.69475 -13.15326 -12.75143 -12.42752 -12.39318 -12.31076 -12.06784 -11.79656 -11.77300 -11.16503 -10.97699 -10.60691 -10.49467 -9.30520 -8.66978 -8.11808 -6.17428 0.81728 1.40991 1.41837 1.55198 1.59793 2.46498 3.21460 3.66339 3.70128 3.90589 3.94022 4.03609 4.21991 4.31622 4.51220 4.60400 4.73076 4.77782 4.83894 4.95745 5.06059 5.12262 5.24148 5.33610 5.48673 5.72552 5.88026 6.33400 6.56676 6.88189 6.98053 7.49314 9.00059 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055117 B = 0.007229 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.891822 B = 3872.414126 C = 4167.837040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.119 3.881 11 H 0.064 0.936 12 N -0.833 5.833 13 C -0.114 4.114 14 H 0.063 0.937 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.068 4.068 18 S -0.320 6.320 19 C -0.059 4.059 20 H 0.259 0.741 21 H -0.004 1.004 22 H -0.013 1.013 23 H 0.335 0.665 24 H 0.340 0.660 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -15.964 1.031 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.204 4.204 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.543 4.543 8 H 0.077 0.923 9 C -0.002 4.002 10 C 0.006 3.994 11 H 0.083 0.917 12 N -0.364 5.364 13 C -0.136 4.136 14 H 0.082 0.918 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.215 4.215 18 S -0.093 6.093 19 C -0.208 4.208 20 H 0.067 0.933 21 H 0.014 0.986 22 H 0.005 0.995 23 H 0.148 0.852 24 H 0.154 0.846 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.023 -15.276 0.852 15.819 hybrid contribution 0.641 0.512 0.123 0.829 sum 4.663 -14.763 0.975 15.513 Atomic orbital electron populations 1.70110 1.07607 1.27142 1.53352 1.25913 0.95659 1.03048 0.95786 0.85474 0.79128 0.79494 0.77357 1.18868 1.20829 1.20874 1.21585 0.93428 0.91727 1.47581 0.92288 1.19036 0.93601 0.93087 0.94505 1.21318 0.93941 0.91786 0.92387 0.91738 1.58636 1.18507 1.55658 1.03617 1.22065 0.96841 0.97301 0.97394 0.91839 1.21552 0.97819 0.93409 1.02830 1.21687 0.98898 0.97411 0.97453 1.23539 0.97065 0.98333 1.02595 1.86990 1.19771 1.06776 1.95793 1.23410 1.00176 0.95809 1.01371 0.93276 0.98569 0.99450 0.85174 0.84598 0.90328 0.90969 0.91619 0.88109 0.86307 0.88819 0.89459 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.50 -28.82 8.84 25.60 0.23 -28.59 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.80 4.11 29.85 0.12 1.92 16 10 C 0.12 4.56 2.53 44.91 0.11 4.67 16 11 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 12 N -0.83 -28.50 8.80 -168.69 -1.48 -29.98 16 13 C -0.11 -3.52 1.92 -10.90 -0.02 -3.54 16 14 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 15 C -0.12 -2.62 4.29 30.32 0.13 -2.49 16 16 C -0.12 -2.13 5.75 30.49 0.18 -1.95 16 17 C -0.07 -1.29 6.45 72.01 0.46 -0.83 16 18 S -0.32 -9.19 22.33 -56.49 -1.26 -10.45 16 19 C -0.06 -1.89 5.03 72.01 0.36 -1.53 16 20 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.00 -0.22 6.63 -2.38 -0.02 -0.23 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.33 11.20 7.25 -89.70 -0.65 10.55 16 24 H 0.34 9.14 7.65 -89.69 -0.69 8.46 16 25 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 26 H 0.07 1.43 7.25 -2.39 -0.02 1.41 16 27 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.09 2.52 6.85 -2.39 -0.02 2.50 16 32 H 0.08 3.16 6.38 -2.39 -0.02 3.14 16 Total: -1.00 -65.57 262.61 1.37 -64.20 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.23 Total: 18.75 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 2.04 Total: -32.35 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.20 Total: -87.98 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.26 Total: -10.45 kcal Total: -65.57 1.37 -64.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.274 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds