Wall clock time and date at job start Mon Mar 30 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00459 * 2 1 4 4 H 1.48502 * 109.46664 * 269.99760 * 3 2 1 5 5 H 1.48500 * 109.46702 * 29.99666 * 3 2 1 6 6 H 1.48493 * 109.46908 * 149.99750 * 3 2 1 7 7 C 1.37884 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47543 * 299.99920 * 9 7 2 11 11 C 1.53000 * 109.47425 * 60.00074 * 9 7 2 12 12 N 1.46900 * 109.47272 * 183.59610 * 11 9 7 13 13 C 1.53004 * 109.47104 * 180.02562 * 9 7 2 14 14 H 1.09003 * 109.38850 * 185.80373 * 13 9 7 15 15 C 1.52586 * 109.38901 * 305.59948 * 13 9 7 16 16 C 1.52579 * 110.72406 * 190.72444 * 15 13 9 17 17 C 1.53100 * 109.95706 * 289.32503 * 16 15 13 18 18 S 1.81742 * 108.83845 * 63.02740 * 17 16 15 19 19 C 1.53100 * 109.30986 * 66.04531 * 13 9 7 20 20 H 0.96998 * 119.99810 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46910 * 303.60043 * 11 9 7 22 22 H 1.09005 * 109.46955 * 63.59451 * 11 9 7 23 23 H 1.00903 * 110.99844 * 173.67771 * 12 11 9 24 24 H 1.00894 * 110.99703 * 297.62481 * 12 11 9 25 25 H 1.08992 * 109.22411 * 311.05078 * 15 13 9 26 26 H 1.09002 * 109.22074 * 70.44453 * 15 13 9 27 27 H 1.08997 * 109.39298 * 49.48000 * 16 15 13 28 28 H 1.08999 * 109.38527 * 169.17543 * 16 15 13 29 29 H 1.09001 * 109.57264 * 182.83913 * 17 16 15 30 30 H 1.08990 * 109.57577 * 303.21873 * 17 16 15 31 31 H 1.08997 * 109.57556 * 296.68382 * 19 13 9 32 32 H 1.09001 * 109.57287 * 57.07347 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4271 -3.8126 -1.2064 13 6 2.2451 -3.6622 0.0018 14 1 1.7028 -4.6019 -0.1021 15 6 3.2121 -3.5033 -1.1678 16 6 4.0433 -4.7687 -1.3568 17 6 5.0453 -4.9121 -0.2082 18 16 4.1289 -5.1041 1.3495 19 6 3.0190 -3.6652 1.3228 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2930 -1.7173 -1.2823 22 1 1.0031 -2.5873 -2.1376 23 1 -1.0898 -3.8403 -1.9667 24 1 0.1663 -4.6286 -1.2141 25 1 2.6453 -3.3068 -2.0778 26 1 3.8780 -2.6630 -0.9713 27 1 3.3836 -5.6362 -1.3721 28 1 4.5826 -4.7095 -2.3022 29 1 5.6694 -5.7900 -0.3755 30 1 5.6712 -4.0214 -0.1562 31 1 3.6054 -2.7501 1.4047 32 1 2.3190 -3.7284 2.1560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:09 Heat of formation + Delta-G solvation = -23.930988 kcal Electronic energy + Delta-G solvation = -13278.481642 eV Core-core repulsion = 11171.020627 eV Total energy + Delta-G solvation = -2107.461015 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.66067 -34.13063 -32.20380 -31.20826 -27.43116 -26.53919 -24.04947 -22.19522 -20.95202 -18.80827 -16.20230 -16.08094 -15.16382 -14.57056 -14.44355 -13.87069 -13.55155 -13.14492 -12.88703 -12.41633 -12.38101 -11.77032 -11.17509 -11.09526 -10.86333 -10.75592 -10.57859 -10.37946 -10.18358 -10.02911 -9.34117 -8.84042 -8.80300 -8.43086 -7.61538 -7.24162 -6.02640 -4.09814 2.27422 3.03590 3.26161 3.34279 3.36282 4.39163 5.10136 5.18482 5.25672 5.45611 5.61040 5.72579 5.75255 5.88251 5.96872 6.15729 6.32188 6.44496 6.52199 6.69485 6.79301 6.95257 7.03098 7.10722 7.63102 7.84815 7.95118 8.20767 8.38478 8.45738 8.94681 9.55243 11.02333 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.010984 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.084320 B = 2548.657733 C = 3001.714417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.062 3.938 10 H 0.036 0.964 11 C 0.062 3.938 12 N -0.854 5.854 13 C -0.075 4.075 14 H 0.059 0.941 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.072 4.072 18 S -0.314 6.314 19 C -0.048 4.048 20 H 0.260 0.740 21 H 0.102 0.898 22 H -0.001 1.001 23 H 0.320 0.680 24 H 0.320 0.680 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -7.031 -2.697 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.042 3.958 10 H 0.054 0.946 11 C -0.067 4.067 12 N -0.382 5.382 13 C -0.095 4.095 14 H 0.077 0.923 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.220 4.220 18 S -0.087 6.087 19 C -0.196 4.196 20 H 0.070 0.930 21 H 0.120 0.880 22 H 0.017 0.983 23 H 0.130 0.870 24 H 0.132 0.868 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.549 -7.435 -1.173 9.351 hybrid contribution 0.828 1.741 -1.854 2.675 sum 6.377 -5.693 -3.027 9.069 Atomic orbital electron populations 1.69881 1.05779 1.26382 1.50284 1.24992 0.94800 0.98991 0.95137 0.86691 0.79976 0.83924 0.78009 1.20841 1.21244 1.19963 1.21185 0.92759 0.90402 1.50781 0.92468 1.18702 0.91398 0.90889 0.94820 0.94567 1.22171 0.96143 0.91463 0.96962 1.58981 1.21994 1.05485 1.51740 1.21322 0.96258 1.00505 0.91445 0.92298 1.21568 0.98130 0.95945 0.99723 1.21804 0.97583 1.00221 0.96607 1.23314 0.99390 1.04644 0.94639 1.86517 1.49782 1.41817 1.30603 1.23554 0.98474 0.95334 1.02217 0.92978 0.87971 0.98258 0.87021 0.86842 0.91419 0.91389 0.91431 0.91965 0.88995 0.90370 0.89291 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 11.30 55.43 0.63 -23.91 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.02 7.24 -34.44 -0.25 -13.27 16 8 H 0.06 1.43 5.77 -52.49 -0.30 1.13 16 9 C 0.06 1.46 1.76 -91.77 -0.16 1.30 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C 0.06 1.41 5.92 -3.82 -0.02 1.39 16 12 N -0.85 -16.57 9.55 -10.37 -0.10 -16.66 16 13 C -0.08 -1.45 1.67 -90.78 -0.15 -1.60 16 14 H 0.06 1.12 6.44 -51.93 -0.33 0.79 16 15 C -0.12 -2.06 4.31 -27.16 -0.12 -2.18 16 16 C -0.12 -1.79 5.75 -26.90 -0.15 -1.94 16 17 C -0.07 -1.02 6.45 37.21 0.24 -0.78 16 18 S -0.31 -5.28 22.33 -107.50 -2.40 -7.68 16 19 C -0.05 -0.91 5.49 37.21 0.20 -0.70 16 20 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 21 H 0.10 2.67 5.98 -51.93 -0.31 2.36 16 22 H 0.00 -0.02 6.22 -51.93 -0.32 -0.34 16 23 H 0.32 5.49 9.08 -39.29 -0.36 5.13 16 24 H 0.32 5.64 7.31 -39.29 -0.29 5.35 16 25 H 0.07 1.25 6.06 -51.93 -0.31 0.93 16 26 H 0.07 1.30 6.63 -51.93 -0.34 0.95 16 27 H 0.07 0.97 8.06 -51.93 -0.42 0.56 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.77 7.12 -51.93 -0.37 1.40 16 32 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 255.60 15.07 3.85 3.85 Total: -1.00 -26.65 255.60 -8.16 -34.81 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.61 Total: 10.22 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.51 Total: -16.22 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.53 Total: -40.58 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.40 Total: -7.68 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.65 -8.16 -34.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.875 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds