Wall clock time and date at job start Mon Mar 30 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00459 * 2 1 4 4 H 1.48502 * 109.46664 * 269.99760 * 3 2 1 5 5 H 1.48500 * 109.46702 * 29.99666 * 3 2 1 6 6 H 1.48493 * 109.46908 * 149.99750 * 3 2 1 7 7 C 1.37884 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47543 * 299.99920 * 9 7 2 11 11 C 1.53000 * 109.47425 * 60.00074 * 9 7 2 12 12 N 1.46900 * 109.47272 * 183.59610 * 11 9 7 13 13 C 1.53004 * 109.47104 * 180.02562 * 9 7 2 14 14 H 1.09003 * 109.38850 * 185.80373 * 13 9 7 15 15 C 1.52586 * 109.38901 * 305.59948 * 13 9 7 16 16 C 1.52579 * 110.72406 * 190.72444 * 15 13 9 17 17 C 1.53100 * 109.95706 * 289.32503 * 16 15 13 18 18 S 1.81742 * 108.83845 * 63.02740 * 17 16 15 19 19 C 1.53100 * 109.30986 * 66.04531 * 13 9 7 20 20 H 0.96998 * 119.99810 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46910 * 303.60043 * 11 9 7 22 22 H 1.09005 * 109.46955 * 63.59451 * 11 9 7 23 23 H 1.00903 * 110.99844 * 173.67771 * 12 11 9 24 24 H 1.00894 * 110.99703 * 297.62481 * 12 11 9 25 25 H 1.08992 * 109.22411 * 311.05078 * 15 13 9 26 26 H 1.09002 * 109.22074 * 70.44453 * 15 13 9 27 27 H 1.08997 * 109.39298 * 49.48000 * 16 15 13 28 28 H 1.08999 * 109.38527 * 169.17543 * 16 15 13 29 29 H 1.09001 * 109.57264 * 182.83913 * 17 16 15 30 30 H 1.08990 * 109.57577 * 303.21873 * 17 16 15 31 31 H 1.08997 * 109.57556 * 296.68382 * 19 13 9 32 32 H 1.09001 * 109.57287 * 57.07347 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4271 -3.8126 -1.2064 13 6 2.2451 -3.6622 0.0018 14 1 1.7028 -4.6019 -0.1021 15 6 3.2121 -3.5033 -1.1678 16 6 4.0433 -4.7687 -1.3568 17 6 5.0453 -4.9121 -0.2082 18 16 4.1289 -5.1041 1.3495 19 6 3.0190 -3.6652 1.3228 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2930 -1.7173 -1.2823 22 1 1.0031 -2.5873 -2.1376 23 1 -1.0898 -3.8403 -1.9667 24 1 0.1663 -4.6286 -1.2141 25 1 2.6453 -3.3068 -2.0778 26 1 3.8780 -2.6630 -0.9713 27 1 3.3836 -5.6362 -1.3721 28 1 4.5826 -4.7095 -2.3022 29 1 5.6694 -5.7900 -0.3755 30 1 5.6712 -4.0214 -0.1562 31 1 3.6054 -2.7501 1.4047 32 1 2.3190 -3.7284 2.1560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485693.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:09 Heat of formation + Delta-G solvation = -40.441972 kcal Electronic energy + Delta-G solvation = -13279.197612 eV Core-core repulsion = 11171.020627 eV Total energy + Delta-G solvation = -2108.176985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27274 -35.69244 -34.11299 -32.71505 -29.21128 -27.92479 -25.96297 -23.73012 -22.39140 -20.57158 -18.06031 -17.46939 -16.90028 -16.34805 -15.90252 -15.46537 -15.11169 -14.66465 -14.25865 -13.96630 -13.85933 -13.52715 -12.96874 -12.75163 -12.57299 -12.26889 -12.19487 -12.01194 -11.86711 -11.69664 -10.87831 -10.67178 -10.44849 -10.34081 -9.27603 -8.59550 -8.05004 -6.17478 0.96084 1.40094 1.43028 1.50814 1.68216 2.44180 3.21500 3.86510 3.95358 4.08847 4.13747 4.19451 4.44431 4.52790 4.70076 4.75554 4.86587 4.90556 5.13170 5.15337 5.17402 5.24860 5.40097 5.53181 5.64131 5.94684 6.07137 6.36286 6.62183 6.84855 6.98410 7.50298 8.98923 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.010984 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.084320 B = 2548.657733 C = 3001.714417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.064 3.936 10 H -0.008 1.008 11 C 0.075 3.925 12 N -0.855 5.855 13 C -0.065 4.065 14 H 0.064 0.936 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.067 4.067 18 S -0.314 6.314 19 C -0.049 4.049 20 H 0.258 0.742 21 H 0.066 0.934 22 H 0.004 0.996 23 H 0.335 0.665 24 H 0.334 0.666 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -8.180 -3.645 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.043 3.957 10 H 0.011 0.989 11 C -0.056 4.056 12 N -0.385 5.385 13 C -0.085 4.085 14 H 0.082 0.918 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.215 4.215 18 S -0.087 6.087 19 C -0.197 4.197 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.022 0.978 23 H 0.147 0.853 24 H 0.147 0.853 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.258 -8.602 -2.128 11.454 hybrid contribution 0.304 2.039 -1.553 2.581 sum 7.563 -6.563 -3.681 10.668 Atomic orbital electron populations 1.70033 1.07080 1.26764 1.51656 1.25697 0.95467 1.02071 0.95320 0.85775 0.78845 0.80309 0.78046 1.20298 1.21589 1.19378 1.21482 0.92948 0.91339 1.49499 0.92306 1.18588 0.91811 0.92061 0.93244 0.98938 1.21807 0.95529 0.91587 0.96671 1.58808 1.22120 1.04798 1.52747 1.21160 0.95890 0.98708 0.92725 0.91763 1.21475 0.97720 0.97429 0.98210 1.21732 0.97409 0.98259 0.97974 1.23468 0.99195 1.06274 0.92572 1.86516 1.49305 1.39799 1.33037 1.23340 0.98699 0.96162 1.01505 0.93316 0.91528 0.97779 0.85307 0.85280 0.92159 0.92957 0.90769 0.89177 0.85956 0.90040 0.90913 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.19 11.30 21.45 0.24 -51.94 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.94 42.69 29.54 68.60 2.03 44.72 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.51 -26.48 7.24 25.60 0.19 -26.29 16 8 H 0.06 2.96 5.77 -2.91 -0.02 2.94 16 9 C 0.06 3.03 1.76 -11.54 -0.02 3.01 16 10 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 11 C 0.07 3.42 5.92 86.30 0.51 3.93 16 12 N -0.85 -32.63 9.55 -186.71 -1.78 -34.41 16 13 C -0.06 -2.46 1.67 -10.90 -0.02 -2.48 16 14 H 0.06 2.37 6.44 -2.39 -0.02 2.36 16 15 C -0.11 -3.73 4.31 30.32 0.13 -3.60 16 16 C -0.12 -2.91 5.75 30.49 0.18 -2.73 16 17 C -0.07 -1.67 6.45 72.02 0.46 -1.21 16 18 S -0.31 -9.90 22.33 -56.49 -1.26 -11.16 16 19 C -0.05 -1.84 5.49 72.02 0.40 -1.45 16 20 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 21 H 0.07 3.57 5.98 -2.39 -0.01 3.55 16 22 H 0.00 0.18 6.22 -2.38 -0.01 0.17 16 23 H 0.34 11.16 9.08 -89.69 -0.81 10.34 16 24 H 0.33 11.27 7.31 -89.70 -0.66 10.61 16 25 H 0.06 2.11 6.06 -2.39 -0.01 2.10 16 26 H 0.05 1.92 6.63 -2.39 -0.02 1.90 16 27 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.92 7.12 -2.39 -0.02 2.91 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -57.63 255.60 1.15 -56.48 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.34 Total: 26.00 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 2.27 Total: -29.68 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.54 Total: -86.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.26 Total: -11.16 kcal Total: -57.63 1.15 -56.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485693.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.034 kcal (2) G-P(sol) polarization free energy of solvation -57.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds