Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99984 * 2 1 4 4 O 1.20821 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99674 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.53945 * 304.88904 * 5 3 2 7 7 C 1.53096 * 109.51155 * 65.00036 * 5 3 2 8 8 N 1.47016 * 109.25743 * 176.78542 * 7 5 3 9 9 C 1.47014 * 110.75074 * 301.38200 * 8 7 5 10 10 H 1.09003 * 109.50443 * 298.63765 * 9 8 7 11 11 C 1.50696 * 109.50605 * 178.55606 * 9 8 7 12 12 H 1.08006 * 119.99882 * 239.99779 * 11 9 8 13 13 C 1.37882 * 120.00537 * 59.99687 * 11 9 8 14 14 N 1.31515 * 119.99709 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00347 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47103 * 89.99831 * 15 13 11 17 17 H 1.48504 * 109.46876 * 210.00254 * 15 13 11 18 18 H 1.48504 * 109.47100 * 329.99820 * 15 13 11 19 19 C 1.53099 * 109.25995 * 58.61926 * 9 8 7 20 20 O 1.43018 * 109.25626 * 303.14772 * 19 9 8 21 21 H 1.09004 * 109.46905 * 59.99934 * 1 2 3 22 22 H 1.08996 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47190 * 300.00293 * 1 2 3 24 24 H 1.09001 * 109.50487 * 296.71594 * 7 5 3 25 25 H 1.08997 * 109.50276 * 56.84799 * 7 5 3 26 26 H 1.00898 * 110.99671 * 177.60630 * 8 7 5 27 27 H 0.96994 * 120.00261 * 180.02562 * 14 13 11 28 28 H 1.08997 * 109.50235 * 63.08414 * 19 9 8 29 29 H 1.09001 * 109.50341 * 183.21675 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9615 0.7069 0.8418 7 6 4.1083 0.6928 -1.3088 8 7 5.5706 0.8424 -1.3370 9 6 5.9518 2.2573 -1.2187 10 1 5.5450 2.8156 -2.0619 11 6 7.4541 2.3751 -1.2149 12 1 7.9593 2.8135 -0.3670 13 6 8.1838 1.9232 -2.2940 14 7 7.5687 1.3898 -3.3268 15 14 10.0461 2.0686 -2.2891 16 1 10.6367 0.8435 -1.6929 17 1 10.5340 2.2257 -3.6828 18 1 10.4481 3.2524 -1.4876 19 6 5.3913 2.8237 0.0886 20 8 3.9730 2.6414 0.1120 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 3.8494 -0.3642 -1.3717 25 1 3.6715 1.2262 -2.1529 26 1 5.9600 0.4316 -2.1722 27 1 8.0820 1.0715 -4.0858 28 1 5.8395 2.3008 0.9335 29 1 5.6227 3.8869 0.1534 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564559.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = -146.663752 kcal Electronic energy + Delta-G solvation = -14813.563221 eV Core-core repulsion = 12122.194148 eV Total energy + Delta-G solvation = -2691.369073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77228 -39.98769 -37.57341 -36.06302 -34.20081 -32.52084 -29.41552 -27.75357 -26.59298 -24.62282 -22.49399 -21.24648 -19.02190 -18.71557 -18.26646 -17.50778 -16.94207 -16.62910 -15.98513 -15.48878 -15.34139 -15.09588 -14.70528 -14.17321 -13.90656 -13.76563 -13.04775 -12.86362 -12.80330 -12.48731 -12.06178 -11.86437 -11.76366 -11.43095 -11.26013 -10.73036 -10.57358 -9.05361 -8.21590 -6.33879 0.96594 1.31007 1.46465 1.47625 1.57548 2.42396 2.94879 3.07520 3.58402 3.81815 3.88225 4.09010 4.30458 4.32992 4.46015 4.51812 4.58638 4.68612 4.69715 4.86178 5.17804 5.25721 5.69978 5.79442 6.15278 6.45954 6.61307 6.81111 6.88582 7.38164 8.88449 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.071016 B = 0.007151 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.181222 B = 3914.444037 C = 4152.408413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.480 3.520 4 O -0.523 6.523 5 C 0.104 3.896 6 H 0.120 0.880 7 C 0.035 3.965 8 N -0.679 5.679 9 C 0.177 3.823 10 H -0.035 1.035 11 C -0.530 4.530 12 H 0.069 0.931 13 C 0.021 3.979 14 N -0.925 5.925 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.081 3.919 20 O -0.392 6.392 21 H 0.060 0.940 22 H 0.142 0.858 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.009 0.991 26 H 0.359 0.641 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 -4.836 5.542 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.322 3.678 4 O -0.411 6.411 5 C 0.045 3.955 6 H 0.137 0.863 7 C -0.095 4.095 8 N -0.316 5.316 9 C 0.069 3.931 10 H -0.018 1.018 11 C -0.568 4.568 12 H 0.087 0.913 13 C -0.178 4.178 14 N -0.565 5.565 15 Si 0.796 3.204 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.005 3.995 20 O -0.312 6.312 21 H 0.079 0.921 22 H 0.160 0.840 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.028 0.972 26 H 0.182 0.818 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.899 -4.598 6.050 11.702 hybrid contribution 0.574 0.426 -1.337 1.516 sum -8.325 -4.172 4.714 10.437 Atomic orbital electron populations 1.23677 0.73924 1.06276 1.02728 1.86486 1.25558 1.31058 1.83588 1.23230 0.90954 0.81830 0.71769 1.90631 1.67300 1.37552 1.45664 1.21501 0.87104 0.85786 1.01109 0.86296 1.22406 0.91774 1.01620 0.93706 1.61086 1.05532 1.18232 1.46748 1.19652 0.95370 0.86115 0.91955 1.01755 1.21324 0.91218 1.40532 1.03749 0.91318 1.25805 1.03654 0.93878 0.94491 1.69768 1.37553 1.41608 1.07546 0.85368 0.79206 0.78753 0.77120 1.19881 1.21173 1.19139 1.22895 0.77186 1.01487 0.97933 1.87896 1.24985 1.23667 1.94663 0.92099 0.84035 0.91509 0.87441 0.97244 0.81777 0.92313 0.91730 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 15 2 O -0.35 -9.56 10.56 -51.41 -0.54 -10.10 15 3 C 0.48 16.63 7.29 71.24 0.52 17.15 15 4 O -0.52 -21.09 16.26 28.39 0.46 -20.63 15 5 C 0.10 3.88 3.33 29.88 0.10 3.98 15 6 H 0.12 3.92 8.14 -2.38 -0.02 3.90 15 7 C 0.04 1.41 6.02 86.31 0.52 1.93 15 8 N -0.68 -32.11 6.54 -494.58 -3.24 -35.35 15 9 C 0.18 9.03 2.59 44.18 0.11 9.14 15 10 H -0.04 -2.04 8.14 -2.39 -0.02 -2.06 15 11 C -0.53 -28.22 8.77 25.60 0.22 -28.00 15 12 H 0.07 3.51 7.74 -2.91 -0.02 3.48 15 13 C 0.02 1.13 5.35 84.66 0.45 1.58 15 14 N -0.92 -51.03 11.49 21.45 0.25 -50.78 15 15 Si 0.97 41.93 29.54 68.60 2.03 43.96 15 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 17 H -0.29 -12.24 7.11 99.48 0.71 -11.53 15 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 19 C 0.08 3.50 6.23 72.02 0.45 3.95 15 20 O -0.39 -16.96 10.01 -129.98 -1.30 -18.26 15 21 H 0.06 1.19 8.13 -2.38 -0.02 1.17 15 22 H 0.14 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.07 1.22 8.13 -2.39 -0.02 1.20 15 24 H 0.11 3.59 8.14 -2.39 -0.02 3.57 15 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 26 H 0.36 18.41 6.74 -89.70 -0.60 17.80 15 27 H 0.27 14.00 8.31 -92.71 -0.77 13.23 15 28 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 29 H 0.10 4.12 8.14 -2.39 -0.02 4.10 15 Total: -1.00 -63.42 251.91 1.78 -61.64 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.55 Total: 18.08 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 3.58 Total: 11.43 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.99 Total: -86.13 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.38 Total: -48.99 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -63.42 1.78 -61.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564559.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.022 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds