Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48502 * 109.46792 * 265.02437 * 3 2 1 5 5 H 1.48498 * 109.47117 * 25.02068 * 3 2 1 6 6 H 1.48493 * 109.47202 * 145.02459 * 3 2 1 7 7 C 1.37877 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99480 * 352.82312 * 7 2 1 9 9 C 1.50699 * 119.99959 * 173.09959 * 7 2 1 10 10 H 1.08995 * 109.47285 * 1.40120 * 9 7 2 11 11 C 1.53000 * 109.46970 * 241.39972 * 9 7 2 12 12 N 1.46897 * 109.47150 * 62.92938 * 11 9 7 13 13 C 1.53001 * 109.46846 * 121.40114 * 9 7 2 14 14 C 1.52585 * 109.22514 * 300.59255 * 13 9 7 15 15 C 1.53118 * 109.94490 * 168.96383 * 14 13 9 16 16 S 1.81743 * 108.80677 * 63.08999 * 15 14 13 17 17 C 1.81748 * 102.22327 * 306.71357 * 16 15 14 18 18 C 1.52586 * 109.22472 * 179.40600 * 13 9 7 19 19 H 0.97000 * 120.00481 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46503 * 182.93288 * 11 9 7 21 21 H 1.09001 * 109.47187 * 302.92881 * 11 9 7 22 22 H 1.00902 * 110.99978 * 173.82370 * 12 11 9 23 23 H 1.00902 * 110.99877 * 297.77797 * 12 11 9 24 24 H 1.08991 * 109.22484 * 59.99972 * 13 9 7 25 25 H 1.08996 * 109.39170 * 289.15454 * 14 13 9 26 26 H 1.09005 * 109.38715 * 48.86148 * 14 13 9 27 27 H 1.09003 * 109.60936 * 303.28032 * 15 14 13 28 28 H 1.08996 * 109.57676 * 182.87665 * 15 14 13 29 29 H 1.08998 * 109.57431 * 293.45900 * 17 16 15 30 30 H 1.08997 * 109.68722 * 173.13885 * 17 16 15 31 31 H 1.09003 * 109.38710 * 311.14156 * 18 13 9 32 32 H 1.08994 * 109.39225 * 70.94153 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6017 1.9857 -1.3948 5 1 1.3979 2.6808 0.5921 6 1 3.4901 1.4730 0.8025 7 6 2.0046 -1.1940 0.0005 8 1 1.4709 -2.1257 0.1178 9 6 3.5034 -1.1988 -0.1563 10 1 3.8642 -0.1730 -0.2313 11 6 3.8810 -1.9663 -1.4248 12 7 3.3271 -1.2765 -2.5976 13 6 4.1411 -1.8761 1.0585 14 6 3.7489 -1.1151 2.3215 15 6 4.1424 -1.9228 3.5614 16 16 5.9502 -2.1073 3.5911 17 6 6.2937 -2.7965 1.9448 18 6 5.6572 -1.8910 0.8871 19 1 -0.4851 0.8400 -0.0004 20 1 4.9666 -2.0144 -1.5106 21 1 3.4755 -2.9767 -1.3724 22 1 3.6457 -1.7057 -3.4534 23 1 2.3192 -1.2509 -2.5593 24 1 3.7778 -2.9012 1.1297 25 1 4.2609 -0.1530 2.3380 26 1 2.6714 -0.9501 2.3247 27 1 3.6754 -2.9069 3.5202 28 1 3.8140 -1.3980 4.4585 29 1 5.8688 -3.7976 1.8721 30 1 7.3707 -2.8445 1.7843 31 1 5.9054 -2.2651 -0.1062 32 1 6.0441 -0.8783 0.9995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = -25.424519 kcal Electronic energy + Delta-G solvation = -13291.649457 eV Core-core repulsion = 11184.123678 eV Total energy + Delta-G solvation = -2107.525780 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.72185 -33.97736 -32.23855 -31.03255 -29.48370 -25.45237 -24.18919 -22.19513 -20.50184 -18.97650 -17.10617 -16.35908 -15.10208 -14.41275 -14.15789 -14.13830 -13.37323 -13.12043 -12.95614 -12.65771 -12.43764 -12.38901 -11.70660 -11.26638 -10.97513 -10.84462 -10.48328 -10.33304 -9.99282 -9.69296 -9.25701 -9.17854 -8.90502 -8.53207 -7.76454 -7.38859 -6.10130 -4.09219 2.13642 2.86579 3.37495 3.42831 3.47434 4.46187 5.08140 5.21495 5.27225 5.33604 5.47782 5.60350 5.65987 5.81847 5.88150 6.04490 6.22660 6.33351 6.33624 6.46814 6.51073 6.84524 6.88146 7.00331 7.17785 7.34251 7.75557 8.10653 8.36734 8.49711 8.94407 9.55160 11.02113 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.011666 C = 0.009856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.972437 B = 2399.606761 C = 2840.105585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.018 3.982 10 H 0.044 0.956 11 C 0.073 3.927 12 N -0.848 5.848 13 C -0.080 4.080 14 C -0.111 4.111 15 C -0.069 4.069 16 S -0.303 6.303 17 C -0.071 4.071 18 C -0.125 4.125 19 H 0.263 0.737 20 H 0.044 0.956 21 H 0.010 0.990 22 H 0.317 0.683 23 H 0.354 0.646 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -3.917 2.153 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.122 4.122 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.545 4.545 8 H 0.086 0.914 9 C -0.001 4.001 10 H 0.062 0.938 11 C -0.058 4.058 12 N -0.378 5.378 13 C -0.100 4.100 14 C -0.150 4.150 15 C -0.217 4.217 16 S -0.078 6.078 17 C -0.219 4.219 18 C -0.164 4.164 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.029 0.971 22 H 0.127 0.873 23 H 0.168 0.832 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.288 -2.926 3.264 11.183 hybrid contribution -0.922 -0.366 -1.098 1.479 sum 9.367 -3.292 2.166 10.162 Atomic orbital electron populations 1.69925 1.06428 1.27038 1.50425 1.25038 0.94495 0.98861 0.93847 0.86865 0.79869 0.83513 0.79256 1.19612 1.22419 1.19055 1.20827 0.89258 0.94257 1.50113 0.91448 1.19232 0.96565 0.95585 0.88722 0.93777 1.21908 0.96117 0.94893 0.92840 1.58683 1.16443 1.59403 1.03234 1.21175 0.91886 0.99759 0.97158 1.21748 1.04165 0.97718 0.91377 1.23527 0.91366 1.03880 1.02911 1.86495 1.12223 1.85629 1.23411 1.23404 1.03529 1.01289 0.93702 1.22006 0.97419 0.99415 0.97565 0.92724 0.93802 0.97140 0.87287 0.83151 0.92434 0.92021 0.88369 0.90230 0.88662 0.90382 0.88834 0.90886 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.47 26.99 -169.99 -4.59 16.89 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.27 -6.27 6.61 56.52 0.37 -5.90 16 7 C -0.51 -12.98 6.42 -34.44 -0.22 -13.20 16 8 H 0.07 1.92 8.06 -52.48 -0.42 1.49 16 9 C 0.02 0.40 1.56 -91.77 -0.14 0.25 16 10 H 0.04 1.03 4.73 -51.93 -0.25 0.79 16 11 C 0.07 1.43 5.97 -3.83 -0.02 1.41 16 12 N -0.85 -16.58 9.56 -10.37 -0.10 -16.68 16 13 C -0.08 -1.51 1.52 -91.04 -0.14 -1.65 16 14 C -0.11 -2.12 4.96 -26.88 -0.13 -2.25 16 15 C -0.07 -1.11 6.46 37.22 0.24 -0.87 16 16 S -0.30 -4.78 22.33 -107.50 -2.40 -7.18 16 17 C -0.07 -1.01 6.45 37.21 0.24 -0.77 16 18 C -0.13 -2.01 4.94 -26.89 -0.13 -2.15 16 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 20 H 0.04 0.77 6.02 -51.93 -0.31 0.46 16 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.32 5.12 9.08 -39.29 -0.36 4.76 16 23 H 0.35 7.57 8.17 -39.29 -0.32 7.25 16 24 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 25 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 26 H 0.10 2.11 6.80 -51.93 -0.35 1.76 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.10 5.79 -51.93 -0.30 0.80 16 32 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 LS Contribution 259.13 15.07 3.90 3.90 Total: -1.00 -27.73 259.13 -7.66 -35.38 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.84 Total: 10.30 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.41 Total: -17.16 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.67 Total: -42.14 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.59 Total: 16.89 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -2.40 Total: -7.18 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.73 -7.66 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.960 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds