Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99737 * 2 1 4 4 H 1.48502 * 109.46792 * 265.02437 * 3 2 1 5 5 H 1.48498 * 109.47117 * 25.02068 * 3 2 1 6 6 H 1.48493 * 109.47202 * 145.02459 * 3 2 1 7 7 C 1.37877 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99480 * 352.82312 * 7 2 1 9 9 C 1.50699 * 119.99959 * 173.09959 * 7 2 1 10 10 H 1.08995 * 109.47285 * 1.40120 * 9 7 2 11 11 C 1.53000 * 109.46970 * 241.39972 * 9 7 2 12 12 N 1.46897 * 109.47150 * 62.92938 * 11 9 7 13 13 C 1.53001 * 109.46846 * 121.40114 * 9 7 2 14 14 C 1.52585 * 109.22514 * 300.59255 * 13 9 7 15 15 C 1.53118 * 109.94490 * 168.96383 * 14 13 9 16 16 S 1.81743 * 108.80677 * 63.08999 * 15 14 13 17 17 C 1.81748 * 102.22327 * 306.71357 * 16 15 14 18 18 C 1.52586 * 109.22472 * 179.40600 * 13 9 7 19 19 H 0.97000 * 120.00481 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46503 * 182.93288 * 11 9 7 21 21 H 1.09001 * 109.47187 * 302.92881 * 11 9 7 22 22 H 1.00902 * 110.99978 * 173.82370 * 12 11 9 23 23 H 1.00902 * 110.99877 * 297.77797 * 12 11 9 24 24 H 1.08991 * 109.22484 * 59.99972 * 13 9 7 25 25 H 1.08996 * 109.39170 * 289.15454 * 14 13 9 26 26 H 1.09005 * 109.38715 * 48.86148 * 14 13 9 27 27 H 1.09003 * 109.60936 * 303.28032 * 15 14 13 28 28 H 1.08996 * 109.57676 * 182.87665 * 15 14 13 29 29 H 1.08998 * 109.57431 * 293.45900 * 17 16 15 30 30 H 1.08997 * 109.68722 * 173.13885 * 17 16 15 31 31 H 1.09003 * 109.38710 * 311.14156 * 18 13 9 32 32 H 1.08994 * 109.39225 * 70.94153 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6017 1.9857 -1.3948 5 1 1.3979 2.6808 0.5921 6 1 3.4901 1.4730 0.8025 7 6 2.0046 -1.1940 0.0005 8 1 1.4709 -2.1257 0.1178 9 6 3.5034 -1.1988 -0.1563 10 1 3.8642 -0.1730 -0.2313 11 6 3.8810 -1.9663 -1.4248 12 7 3.3271 -1.2765 -2.5976 13 6 4.1411 -1.8761 1.0585 14 6 3.7489 -1.1151 2.3215 15 6 4.1424 -1.9228 3.5614 16 16 5.9502 -2.1073 3.5911 17 6 6.2937 -2.7965 1.9448 18 6 5.6572 -1.8910 0.8871 19 1 -0.4851 0.8400 -0.0004 20 1 4.9666 -2.0144 -1.5106 21 1 3.4755 -2.9767 -1.3724 22 1 3.6457 -1.7057 -3.4534 23 1 2.3192 -1.2509 -2.5593 24 1 3.7778 -2.9012 1.1297 25 1 4.2609 -0.1530 2.3380 26 1 2.6714 -0.9501 2.3247 27 1 3.6754 -2.9069 3.5202 28 1 3.8140 -1.3980 4.4585 29 1 5.8688 -3.7976 1.8721 30 1 7.3707 -2.8445 1.7843 31 1 5.9054 -2.2651 -0.1062 32 1 6.0441 -0.8783 0.9995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = -43.636003 kcal Electronic energy + Delta-G solvation = -13292.439166 eV Core-core repulsion = 11184.123678 eV Total energy + Delta-G solvation = -2108.315489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.28033 -35.56508 -34.20285 -32.36621 -31.12481 -27.16996 -25.77347 -23.59014 -22.06734 -20.63691 -19.08243 -17.68694 -16.66374 -16.28677 -15.80073 -15.44390 -14.71520 -14.62042 -14.55836 -14.37636 -14.04161 -13.69740 -13.35493 -12.90980 -12.76569 -12.35187 -12.03253 -11.89157 -11.69587 -11.57063 -10.96227 -10.64729 -10.64042 -10.46665 -9.34383 -8.62651 -8.22721 -6.21465 0.92340 1.39406 1.43487 1.48352 1.64315 2.41654 3.15731 3.74052 3.96056 4.02172 4.11130 4.19113 4.34598 4.48020 4.58570 4.65640 4.77543 4.84347 4.89113 4.99588 5.11293 5.23458 5.30365 5.38391 5.57954 5.65866 5.79987 6.36570 6.50706 6.78821 6.94597 7.44535 8.93472 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.011666 C = 0.009856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.972437 B = 2399.606761 C = 2840.105585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.034 3.966 3 Si 0.927 3.073 4 H -0.272 1.272 5 H -0.303 1.303 6 H -0.252 1.252 7 C -0.486 4.486 8 H 0.030 0.970 9 C 0.016 3.984 10 H 0.032 0.968 11 C 0.076 3.924 12 N -0.856 5.856 13 C -0.076 4.076 14 C -0.108 4.108 15 C -0.065 4.065 16 S -0.308 6.308 17 C -0.065 4.065 18 C -0.118 4.118 19 H 0.261 0.739 20 H 0.074 0.926 21 H 0.008 0.992 22 H 0.338 0.662 23 H 0.340 0.660 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -4.420 2.091 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.164 4.164 3 Si 0.754 3.246 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.176 1.176 7 C -0.524 4.524 8 H 0.048 0.952 9 C -0.003 4.003 10 H 0.050 0.950 11 C -0.054 4.054 12 N -0.385 5.385 13 C -0.096 4.096 14 C -0.147 4.147 15 C -0.213 4.213 16 S -0.083 6.083 17 C -0.212 4.212 18 C -0.157 4.157 19 H 0.070 0.930 20 H 0.092 0.908 21 H 0.026 0.974 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.928 -3.444 3.195 13.755 hybrid contribution -1.722 -0.292 -1.099 2.063 sum 11.207 -3.736 2.096 11.998 Atomic orbital electron populations 1.70045 1.08007 1.27487 1.53341 1.25611 0.94828 1.01620 0.94325 0.86056 0.79175 0.80240 0.79100 1.19752 1.23056 1.17575 1.20955 0.91401 0.92295 1.47730 0.95211 1.19256 0.93840 0.95811 0.91413 0.94970 1.21861 0.97873 0.94155 0.91555 1.58670 1.15457 1.59952 1.04466 1.21061 0.94184 0.98901 0.95451 1.21637 1.01876 0.98012 0.93194 1.23415 0.92344 1.03712 1.01835 1.86566 1.11024 1.85818 1.24885 1.23464 1.05114 1.01042 0.91625 1.21897 0.94706 0.99848 0.99227 0.93003 0.90768 0.97355 0.84948 0.84670 0.92782 0.92874 0.91742 0.89730 0.87661 0.89292 0.86150 0.89219 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.96 13.96 21.45 0.30 -56.66 16 2 C 0.03 1.85 5.47 84.65 0.46 2.32 16 3 Si 0.93 44.60 26.99 68.60 1.85 46.45 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.25 -11.39 6.61 99.48 0.66 -10.73 16 7 C -0.49 -25.26 6.42 25.60 0.16 -25.09 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 9 C 0.02 0.68 1.56 -11.54 -0.02 0.66 16 10 H 0.03 1.45 4.73 -2.39 -0.01 1.44 16 11 C 0.08 2.81 5.97 86.30 0.52 3.33 16 12 N -0.86 -31.95 9.56 -186.72 -1.78 -33.73 16 13 C -0.08 -2.75 1.52 -11.07 -0.02 -2.76 16 14 C -0.11 -4.03 4.96 30.50 0.15 -3.87 16 15 C -0.07 -2.00 6.46 72.02 0.47 -1.53 16 16 S -0.31 -8.84 22.33 -56.49 -1.26 -10.10 16 17 C -0.06 -1.58 6.45 72.01 0.46 -1.11 16 18 C -0.12 -3.37 4.94 30.49 0.15 -3.22 16 19 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 20 H 0.07 2.31 6.02 -2.39 -0.01 2.29 16 21 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 22 H 0.34 10.11 9.08 -89.69 -0.81 9.29 16 23 H 0.34 14.41 8.17 -89.69 -0.73 13.68 16 24 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 25 H 0.05 2.04 7.92 -2.39 -0.02 2.02 16 26 H 0.06 2.82 6.80 -2.38 -0.02 2.80 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.29 5.79 -2.39 -0.01 2.27 16 32 H 0.06 1.90 8.05 -2.39 -0.02 1.88 16 Total: -1.00 -59.73 259.13 0.96 -58.76 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.48 Total: 26.58 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 2.34 Total: -31.30 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -1.49 Total: -90.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.85 Total: 46.45 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.26 Total: -10.10 kcal Total: -59.73 0.96 -58.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.128 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds