Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 120.21166 * 2 1 4 4 C 1.41162 * 119.75735 * 180.02562 * 3 2 1 5 5 C 1.41592 * 106.56434 * 179.97438 * 4 3 2 6 6 C 1.34723 * 107.92877 * 0.02562 * 5 4 3 7 7 N 1.36646 * 109.70269 * 359.97438 * 6 5 4 8 8 C 1.46506 * 125.58737 * 180.02562 * 7 6 5 9 9 C 1.40525 * 120.11639 * 359.97438 * 4 3 2 10 10 C 1.35717 * 120.15217 * 359.73935 * 9 4 3 11 11 C 1.40589 * 120.21279 * 180.02562 * 2 1 3 12 12 C 1.41023 * 119.97296 * 359.95456 * 11 2 1 13 13 H 1.08001 * 119.99852 * 334.42463 * 12 11 2 14 14 C 1.39896 * 120.00229 * 154.41597 * 12 11 2 15 15 N 1.30875 * 119.99956 * 334.61358 * 14 12 11 16 16 Si 1.86793 * 120.00001 * 154.60065 * 14 12 11 17 17 H 1.48496 * 109.47540 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47421 * 300.00696 * 16 14 12 19 19 H 1.48501 * 109.46890 * 60.00465 * 16 14 12 20 20 H 1.08994 * 109.47133 * 276.80425 * 1 2 3 21 21 H 1.08993 * 109.47167 * 36.80718 * 1 2 3 22 22 H 1.09001 * 109.46817 * 156.80494 * 1 2 3 23 23 H 1.08000 * 126.03471 * 180.02562 * 5 4 3 24 24 H 1.08001 * 125.15012 * 179.97438 * 6 5 4 25 25 H 1.08998 * 109.47256 * 262.91560 * 8 7 6 26 26 H 1.08997 * 109.47235 * 22.91858 * 8 7 6 27 27 H 1.08997 * 109.46597 * 142.91741 * 8 7 6 28 28 H 1.07997 * 119.91990 * 179.97438 * 9 4 3 29 29 H 1.07999 * 119.83052 * 180.25748 * 10 9 4 30 30 H 0.97001 * 120.00145 * 354.22563 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1943 0.0000 4 6 3.6140 1.1831 -0.0005 5 6 4.0284 2.5370 -0.0010 6 6 2.9241 3.3088 -0.0002 7 7 1.8096 2.5182 0.0002 8 6 0.4249 2.9967 0.0006 9 6 4.3095 -0.0380 -0.0005 10 6 3.6271 -1.2111 0.0053 11 6 2.2145 -1.2149 -0.0005 12 6 1.5133 -2.4385 -0.0001 13 1 0.5131 -2.4875 0.4043 14 6 2.1133 -3.5887 -0.5238 15 7 3.0529 -3.4826 -1.4285 16 14 1.5734 -5.2759 0.0686 17 1 2.3576 -6.3221 -0.6353 18 1 1.8051 -5.3846 1.5314 19 1 0.1284 -5.4625 -0.2188 20 1 -0.3633 0.1217 1.0204 21 1 -0.3633 0.8227 -0.6157 22 1 -0.3633 -0.9446 -0.4048 23 1 5.0495 2.8889 -0.0019 24 1 2.9203 4.3888 0.0001 25 1 0.0404 2.9957 1.0205 26 1 0.3905 4.0099 -0.3997 27 1 -0.1864 2.3404 -0.6188 28 1 5.3894 -0.0428 -0.0014 29 1 4.1668 -2.1465 0.0095 30 1 3.2754 -2.6133 -1.7971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260651235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = 46.108980 kcal Electronic energy + Delta-G solvation = -13983.058413 eV Core-core repulsion = 11743.190608 eV Total energy + Delta-G solvation = -2239.867806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22822 -36.52369 -33.39804 -32.69664 -30.08932 -28.14820 -26.77131 -25.14097 -23.90168 -20.85133 -20.36206 -18.78753 -17.59196 -15.80902 -15.16506 -14.62013 -14.27737 -13.82724 -13.44047 -12.86049 -12.42682 -12.22780 -12.12599 -11.85658 -11.74300 -11.42768 -11.20717 -10.84682 -10.44612 -10.40165 -9.93077 -9.62484 -9.30680 -8.92863 -8.33874 -7.26594 -7.05133 -6.49913 -4.31162 2.41850 3.01293 3.17142 3.25334 3.37085 3.75965 3.78191 4.03349 4.64875 5.25336 5.45452 5.64568 5.66719 5.75363 5.97498 6.29886 6.33134 6.50780 6.58399 6.63964 6.81046 6.92916 6.96261 7.24707 7.32093 7.66670 7.71237 7.87290 7.96732 8.07308 8.21498 8.41833 8.44052 8.81568 8.95080 10.06253 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.044993 B = 0.009461 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.171046 B = 2958.881071 C = 3467.699381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.254 4.254 3 C 0.154 3.846 4 C -0.210 4.210 5 C -0.179 4.179 6 C -0.027 4.027 7 N -0.496 5.496 8 C 0.083 3.917 9 C -0.062 4.062 10 C -0.195 4.195 11 C 0.120 3.880 12 C -0.512 4.512 13 H 0.078 0.922 14 C 0.038 3.962 15 N -0.796 5.796 16 Si 1.064 2.936 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.276 1.276 20 H 0.031 0.969 21 H 0.035 0.965 22 H 0.061 0.939 23 H 0.121 0.879 24 H 0.145 0.855 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 5.819 1.654 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.260 4.260 3 C 0.049 3.951 4 C -0.213 4.213 5 C -0.205 4.205 6 C -0.149 4.149 7 N -0.183 5.183 8 C -0.059 4.059 9 C -0.081 4.081 10 C -0.214 4.214 11 C 0.116 3.884 12 C -0.541 4.541 13 H 0.096 0.904 14 C -0.184 4.184 15 N -0.419 5.419 16 Si 0.888 3.112 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.202 1.202 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.080 0.920 23 H 0.139 0.861 24 H 0.162 0.838 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.821 4.359 1.455 5.392 hybrid contribution -0.263 1.895 0.171 1.921 sum -3.084 6.254 1.626 7.160 Atomic orbital electron populations 1.20419 0.93845 1.00660 0.98539 1.18397 0.93656 0.89516 1.24414 1.18031 0.93210 0.83109 1.00734 1.17805 0.92223 0.92892 1.18417 1.20402 0.96637 0.92480 1.10978 1.21271 0.85518 0.95237 1.12909 1.43606 1.04656 1.04780 1.65215 1.21922 0.82152 0.99844 1.01978 1.19910 0.97153 0.91312 0.99755 1.20903 0.94661 0.96603 1.09223 1.17211 0.91034 0.91590 0.88583 1.20447 1.03302 0.93583 1.36722 0.90363 1.27017 0.92953 1.05443 0.93008 1.70468 1.23130 1.31534 1.16758 0.83648 0.76829 0.73554 0.77184 1.19885 1.20000 1.20168 0.95037 0.94652 0.92006 0.86063 0.83779 0.92683 0.91387 0.90061 0.88914 0.87366 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 8.85 36.01 0.32 -1.37 16 2 C -0.25 -6.40 5.95 -103.75 -0.62 -7.01 16 3 C 0.15 3.73 6.74 -83.95 -0.57 3.16 16 4 C -0.21 -5.08 6.19 -106.65 -0.66 -5.74 16 5 C -0.18 -3.70 10.85 -39.55 -0.43 -4.13 16 6 C -0.03 -0.50 11.32 -16.65 -0.19 -0.69 16 7 N -0.50 -10.07 3.20 -121.72 -0.39 -10.46 16 8 C 0.08 1.28 10.35 59.85 0.62 1.90 16 9 C -0.06 -1.51 10.03 -39.62 -0.40 -1.91 16 10 C -0.19 -5.07 7.85 -39.34 -0.31 -5.38 16 11 C 0.12 3.21 5.29 -106.81 -0.57 2.64 16 12 C -0.51 -13.46 8.04 -37.91 -0.30 -13.77 16 13 H 0.08 2.00 6.75 -52.49 -0.35 1.64 16 14 C 0.04 0.95 4.92 -17.34 -0.09 0.86 16 15 N -0.80 -21.03 12.31 55.54 0.68 -20.35 16 16 Si 1.06 21.42 30.00 -169.99 -5.10 16.32 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.03 0.67 5.07 -51.93 -0.26 0.41 16 22 H 0.06 1.36 6.40 -51.93 -0.33 1.03 16 23 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 24 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.08 1.26 5.21 -51.93 -0.27 0.99 16 28 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 29 H 0.11 2.85 6.48 -52.49 -0.34 2.51 16 30 H 0.30 8.19 6.70 -40.82 -0.27 7.91 16 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -29.16 248.38 -7.41 -36.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.16 Total: 5.61 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -3.18 Total: -31.43 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.29 Total: -30.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.10 Total: 16.32 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.16 -7.41 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.676 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds