Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 120.21166 * 2 1 4 4 C 1.41162 * 119.75735 * 180.02562 * 3 2 1 5 5 C 1.41592 * 106.56434 * 179.97438 * 4 3 2 6 6 C 1.34723 * 107.92877 * 0.02562 * 5 4 3 7 7 N 1.36646 * 109.70269 * 359.97438 * 6 5 4 8 8 C 1.46506 * 125.58737 * 180.02562 * 7 6 5 9 9 C 1.40525 * 120.11639 * 359.97438 * 4 3 2 10 10 C 1.35717 * 120.15217 * 359.73935 * 9 4 3 11 11 C 1.40589 * 120.21279 * 180.02562 * 2 1 3 12 12 C 1.41023 * 119.97296 * 359.95456 * 11 2 1 13 13 H 1.08001 * 119.99852 * 334.42463 * 12 11 2 14 14 C 1.39896 * 120.00229 * 154.41597 * 12 11 2 15 15 N 1.30875 * 119.99956 * 334.61358 * 14 12 11 16 16 Si 1.86793 * 120.00001 * 154.60065 * 14 12 11 17 17 H 1.48496 * 109.47540 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47421 * 300.00696 * 16 14 12 19 19 H 1.48501 * 109.46890 * 60.00465 * 16 14 12 20 20 H 1.08994 * 109.47133 * 276.80425 * 1 2 3 21 21 H 1.08993 * 109.47167 * 36.80718 * 1 2 3 22 22 H 1.09001 * 109.46817 * 156.80494 * 1 2 3 23 23 H 1.08000 * 126.03471 * 180.02562 * 5 4 3 24 24 H 1.08001 * 125.15012 * 179.97438 * 6 5 4 25 25 H 1.08998 * 109.47256 * 262.91560 * 8 7 6 26 26 H 1.08997 * 109.47235 * 22.91858 * 8 7 6 27 27 H 1.08997 * 109.46597 * 142.91741 * 8 7 6 28 28 H 1.07997 * 119.91990 * 179.97438 * 9 4 3 29 29 H 1.07999 * 119.83052 * 180.25748 * 10 9 4 30 30 H 0.97001 * 120.00145 * 354.22563 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1943 0.0000 4 6 3.6140 1.1831 -0.0005 5 6 4.0284 2.5370 -0.0010 6 6 2.9241 3.3088 -0.0002 7 7 1.8096 2.5182 0.0002 8 6 0.4249 2.9967 0.0006 9 6 4.3095 -0.0380 -0.0005 10 6 3.6271 -1.2111 0.0053 11 6 2.2145 -1.2149 -0.0005 12 6 1.5133 -2.4385 -0.0001 13 1 0.5131 -2.4875 0.4043 14 6 2.1133 -3.5887 -0.5238 15 7 3.0529 -3.4826 -1.4285 16 14 1.5734 -5.2759 0.0686 17 1 2.3576 -6.3221 -0.6353 18 1 1.8051 -5.3846 1.5314 19 1 0.1284 -5.4625 -0.2188 20 1 -0.3633 0.1217 1.0204 21 1 -0.3633 0.8227 -0.6157 22 1 -0.3633 -0.9446 -0.4048 23 1 5.0495 2.8889 -0.0019 24 1 2.9203 4.3888 0.0001 25 1 0.0404 2.9957 1.0205 26 1 0.3905 4.0099 -0.3997 27 1 -0.1864 2.3404 -0.6188 28 1 5.3894 -0.0428 -0.0014 29 1 4.1668 -2.1465 0.0095 30 1 3.2754 -2.6133 -1.7971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = 30.622183 kcal Electronic energy + Delta-G solvation = -13983.729971 eV Core-core repulsion = 11743.190608 eV Total energy + Delta-G solvation = -2240.539364 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91858 -38.35110 -35.18315 -34.43370 -31.75754 -29.97560 -28.40080 -26.85750 -25.63275 -22.60154 -22.18957 -20.44601 -19.42118 -17.46732 -16.89465 -16.16622 -16.04027 -15.50024 -15.21302 -14.32173 -14.10009 -13.89007 -13.82516 -13.59488 -13.26704 -13.12928 -12.87018 -12.51798 -12.16949 -11.95189 -11.70956 -11.38890 -11.13765 -10.79191 -10.09529 -9.21469 -8.87862 -8.26743 -6.26381 0.61933 1.14695 1.52214 1.62464 1.81221 2.10731 2.25957 2.36979 2.78218 3.58430 4.03853 4.19216 4.29997 4.36494 4.53801 4.60480 4.70916 4.78816 4.84806 4.93295 5.02704 5.19455 5.24073 5.40287 5.51895 5.78060 5.81662 5.96219 6.15480 6.25862 6.31154 6.56931 6.84143 6.90202 7.06257 8.08330 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.044993 B = 0.009461 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.171046 B = 2958.881071 C = 3467.699381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.264 4.264 3 C 0.123 3.877 4 C -0.226 4.226 5 C -0.212 4.212 6 C 0.009 3.991 7 N -0.497 5.497 8 C 0.074 3.926 9 C -0.074 4.074 10 C -0.215 4.215 11 C 0.084 3.916 12 C -0.544 4.544 13 H 0.076 0.924 14 C 0.002 3.998 15 N -0.821 5.821 16 Si 1.116 2.884 17 H -0.273 1.273 18 H -0.265 1.265 19 H -0.256 1.256 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.146 0.854 24 H 0.199 0.801 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 8.260 2.129 9.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.269 4.269 3 C 0.016 3.984 4 C -0.230 4.230 5 C -0.237 4.237 6 C -0.115 4.115 7 N -0.182 5.182 8 C -0.067 4.067 9 C -0.093 4.093 10 C -0.235 4.235 11 C 0.080 3.920 12 C -0.572 4.572 13 H 0.094 0.906 14 C -0.214 4.214 15 N -0.444 5.444 16 Si 0.933 3.067 17 H -0.197 1.197 18 H -0.190 1.190 19 H -0.181 1.181 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.164 0.836 24 H 0.216 0.784 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.898 6.833 1.931 8.100 hybrid contribution 0.070 1.494 0.044 1.497 sum -3.827 8.328 1.975 9.375 Atomic orbital electron populations 1.20398 0.91717 1.01073 0.99637 1.18846 0.95520 0.89645 1.22922 1.18199 0.93512 0.84809 1.01838 1.18349 0.92923 0.94346 1.17364 1.20750 0.98902 0.90911 1.13160 1.22139 0.84205 0.97388 1.07771 1.44004 1.07062 1.03363 1.63728 1.22257 0.79382 1.01844 1.03182 1.20160 0.98208 0.91346 0.99544 1.20850 0.94875 0.96629 1.11114 1.17575 0.91620 0.92781 0.89979 1.20565 1.03649 0.94468 1.38543 0.90573 1.28411 0.92141 1.08845 0.91984 1.70584 1.25124 1.30188 1.18539 0.83026 0.77456 0.69187 0.77052 1.19729 1.19026 1.18071 0.93885 0.92044 0.93300 0.83616 0.78379 0.91327 0.87179 0.90430 0.87158 0.89037 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.06 8.85 71.24 0.63 -2.43 16 2 C -0.26 -13.41 5.95 -19.30 -0.11 -13.53 16 3 C 0.12 5.82 6.74 38.87 0.26 6.08 16 4 C -0.23 -10.82 6.19 -21.18 -0.13 -10.95 16 5 C -0.21 -8.16 10.85 22.29 0.24 -7.92 16 6 C 0.01 0.28 11.32 83.14 0.94 1.23 16 7 N -0.50 -18.30 3.20 -539.02 -1.72 -20.03 16 8 C 0.07 1.93 10.35 127.77 1.32 3.25 16 9 C -0.07 -3.69 10.03 22.24 0.22 -3.47 16 10 C -0.22 -11.82 7.85 22.43 0.18 -11.64 16 11 C 0.08 4.70 5.29 -21.28 -0.11 4.59 16 12 C -0.54 -29.81 8.04 23.35 0.19 -29.62 16 13 H 0.08 4.04 6.75 -2.91 -0.02 4.02 16 14 C 0.00 0.09 4.92 85.24 0.42 0.51 16 15 N -0.82 -45.65 12.31 21.82 0.27 -45.38 16 16 Si 1.12 44.05 30.00 68.60 2.06 46.10 16 17 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 20 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.06 2.24 5.07 -2.39 -0.01 2.22 16 22 H 0.05 2.17 6.40 -2.39 -0.02 2.16 16 23 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 24 H 0.20 4.34 8.06 -2.91 -0.02 4.32 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.11 1.99 8.12 -2.39 -0.02 1.97 16 27 H 0.08 2.10 5.21 -2.39 -0.01 2.09 16 28 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.09 5.18 6.48 -2.91 -0.02 5.16 16 30 H 0.28 16.44 6.70 -92.71 -0.62 15.82 16 Total: -1.00 -66.13 248.38 5.94 -60.19 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.29 Total: 23.02 kcal Atomic # 6 Polarization: -67.95 SS G_CDS: 4.05 Total: -63.91 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -1.46 Total: -65.41 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.06 Total: 46.10 kcal Total: -66.13 5.94 -60.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.812 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds