Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34915 * 125.24286 * 2 1 4 4 C 1.41059 * 107.80208 * 179.97438 * 3 2 1 5 5 C 1.40556 * 106.88920 * 0.02562 * 4 3 2 6 6 C 1.38980 * 119.63737 * 179.97438 * 5 4 3 7 7 C 1.38400 * 121.04306 * 359.97438 * 6 5 4 8 8 C 1.37636 * 121.58087 * 0.02562 * 7 6 5 9 9 C 1.40824 * 120.03948 * 359.97438 * 8 7 6 10 10 C 1.40595 * 120.71592 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00075 * 156.69373 * 10 9 8 12 12 C 1.40024 * 120.00160 * 336.69950 * 10 9 8 13 13 N 1.30817 * 119.99966 * 341.10326 * 12 10 9 14 14 Si 1.86800 * 120.00246 * 161.10974 * 12 10 9 15 15 H 1.48502 * 109.47213 * 59.99348 * 14 12 10 16 16 H 1.48492 * 109.47505 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47002 * 299.99606 * 14 12 10 18 18 N 1.36545 * 125.23554 * 179.70754 * 2 1 3 19 19 C 1.46500 * 125.57231 * 359.97438 * 18 2 1 20 20 H 1.08996 * 109.47576 * 90.01912 * 1 2 3 21 21 H 1.08998 * 109.46915 * 330.01419 * 1 2 3 22 22 H 1.08997 * 109.46771 * 210.02074 * 1 2 3 23 23 H 1.08008 * 126.09908 * 359.96683 * 3 2 1 24 24 H 1.07999 * 119.47721 * 180.02562 * 6 5 4 25 25 H 1.08003 * 119.20887 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.97904 * 179.97438 * 8 7 6 27 27 H 0.96995 * 120.00093 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.46924 * 90.03487 * 19 18 2 29 29 H 1.09004 * 109.47207 * 210.03153 * 19 18 2 30 30 H 1.09001 * 109.47373 * 330.02960 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2855 1.1019 0.0000 4 6 3.6313 0.6791 0.0006 5 6 3.6177 -0.7264 0.0004 6 6 4.8190 -1.4253 0.0003 7 6 6.0322 -0.7592 -0.0001 8 6 6.0998 0.6155 0.0002 9 6 4.9167 1.3794 0.0002 10 6 4.9691 2.7844 0.0010 11 1 4.1309 3.3563 -0.3690 12 6 6.1080 3.4423 0.4813 13 7 6.9522 2.8088 1.2543 14 14 6.4220 5.2246 0.0186 15 1 5.2944 6.0656 0.4944 16 1 7.6839 5.6854 0.6513 17 1 6.5370 5.3399 -1.4575 18 7 2.2948 -1.1153 0.0057 19 6 1.8132 -2.4988 0.0133 20 1 -0.3634 -0.0003 -1.0276 21 1 -0.3633 0.8901 0.5136 22 1 -0.3633 -0.8898 0.5142 23 1 1.9400 2.1252 -0.0005 24 1 4.8056 -2.5052 -0.0003 25 1 6.9479 -1.3319 -0.0005 26 1 7.0606 1.1086 0.0003 27 1 7.7409 3.2646 1.5873 28 1 1.6940 -2.8476 -1.0125 29 1 2.5342 -3.1317 0.5308 30 1 0.8532 -2.5466 0.5273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260763247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = 46.912293 kcal Electronic energy + Delta-G solvation = -13770.383393 eV Core-core repulsion = 11530.550422 eV Total energy + Delta-G solvation = -2239.832971 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05828 -35.82530 -33.44783 -31.97288 -30.16210 -29.23192 -26.05532 -25.37654 -24.34352 -20.49272 -19.79483 -18.84493 -16.97988 -15.64562 -15.01865 -14.75413 -14.62952 -13.62532 -13.11690 -12.87030 -12.69216 -12.28307 -12.09838 -11.76799 -11.53409 -11.46871 -11.15611 -11.04549 -10.74184 -10.49427 -9.79664 -9.67823 -9.31865 -9.11569 -8.11611 -6.88647 -6.70636 -6.45590 -4.19851 2.52433 3.02502 3.05486 3.09628 3.41925 3.81936 3.90661 3.94141 4.65306 5.31180 5.56704 5.58887 5.67363 5.81927 5.83788 5.99261 6.17478 6.26915 6.51429 6.71044 6.78102 7.02218 7.16569 7.24933 7.46559 7.50213 7.86549 8.14515 8.22361 8.28752 8.32772 8.59176 8.75842 8.89943 9.08113 10.10431 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037957 B = 0.009428 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.507652 B = 2969.035170 C = 3618.877023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.154 4.154 4 C -0.188 4.188 5 C 0.130 3.870 6 C -0.286 4.286 7 C -0.052 4.052 8 C -0.233 4.233 9 C 0.157 3.843 10 C -0.435 4.435 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.772 5.772 14 Si 0.911 3.089 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.262 1.262 18 N -0.488 5.488 19 C 0.091 3.909 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.123 0.877 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.283 0.717 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 -3.025 -1.388 6.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C -0.179 4.179 4 C -0.192 4.192 5 C 0.024 3.976 6 C -0.309 4.309 7 C -0.071 4.071 8 C -0.254 4.254 9 C 0.154 3.846 10 C -0.463 4.463 11 H 0.099 0.901 12 C -0.146 4.146 13 N -0.396 5.396 14 Si 0.734 3.266 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.186 1.186 18 N -0.173 5.173 19 C -0.052 4.052 20 H 0.076 0.924 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.141 0.859 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.049 -3.295 -1.226 6.996 hybrid contribution 0.224 0.582 -0.063 0.627 sum -5.824 -2.713 -1.289 6.553 Atomic orbital electron populations 1.20146 0.89722 1.01812 1.01194 1.19849 0.92162 0.85960 1.14379 1.20141 0.92202 0.96182 1.09419 1.19206 0.93102 0.91408 1.15453 1.18055 0.83022 0.93873 1.02603 1.18944 0.89933 0.95989 1.26022 1.20229 0.94483 0.94759 0.97669 1.20876 0.98077 0.91889 1.14567 1.18078 0.88491 0.92337 0.85702 1.19493 1.00607 0.91922 1.34235 0.90095 1.26036 0.95028 1.00943 0.92622 1.69865 1.09999 1.38716 1.20974 0.86324 0.78494 0.81536 0.80199 1.18822 1.20209 1.18609 1.43431 1.04684 1.04188 1.65030 1.21595 0.99968 0.82260 1.01386 0.92387 0.91145 0.92982 0.85930 0.90381 0.89542 0.86575 0.90570 0.92845 0.91072 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.06 36.01 0.36 -0.69 16 2 C -0.02 -0.39 6.86 -81.67 -0.56 -0.95 16 3 C -0.15 -3.61 10.62 -39.69 -0.42 -4.03 16 4 C -0.19 -5.00 6.21 -104.68 -0.65 -5.65 16 5 C 0.13 3.25 6.82 -83.99 -0.57 2.67 16 6 C -0.29 -6.99 9.96 -39.25 -0.39 -7.38 16 7 C -0.05 -1.29 9.94 -39.74 -0.39 -1.69 16 8 C -0.23 -6.35 8.72 -38.82 -0.34 -6.69 16 9 C 0.16 4.41 5.74 -104.75 -0.60 3.80 16 10 C -0.43 -11.72 9.01 -38.02 -0.34 -12.06 16 11 H 0.08 2.09 7.92 -52.48 -0.42 1.68 16 12 C 0.07 1.86 5.14 -17.31 -0.09 1.77 16 13 N -0.77 -19.97 10.96 55.55 0.61 -19.36 16 14 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 18 N -0.49 -10.31 3.19 -117.11 -0.37 -10.68 16 19 C 0.09 1.41 10.86 59.85 0.65 2.06 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.67 6.97 -51.93 -0.36 0.31 16 23 H 0.12 2.67 8.06 -52.48 -0.42 2.25 16 24 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 25 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 26 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.88 6.95 -51.93 -0.36 0.52 16 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -29.99 258.01 -7.81 -37.80 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.55 Total: 3.72 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -3.35 Total: -28.84 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.24 Total: -30.04 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.99 -7.81 -37.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.712 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds