Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35752 * 119.83238 * 2 1 4 4 C 1.40484 * 120.15199 * 180.31767 * 3 2 1 5 5 C 1.41599 * 133.31920 * 179.67558 * 4 3 2 6 6 C 1.34729 * 107.92733 * 179.97438 * 5 4 3 7 7 N 1.36640 * 109.71191 * 0.02562 * 6 5 4 8 8 C 1.46499 * 125.59375 * 179.97438 * 7 6 5 9 9 C 1.38098 * 108.82308 * 359.97438 * 7 6 5 10 10 C 1.38174 * 133.26820 * 179.97438 * 9 7 6 11 11 C 1.40628 * 119.57600 * 180.02562 * 10 9 7 12 12 C 1.41015 * 119.97054 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00332 * 154.34137 * 12 11 10 14 14 C 1.39890 * 119.99947 * 334.34407 * 12 11 10 15 15 N 1.30883 * 120.00259 * 334.45376 * 14 12 11 16 16 Si 1.86797 * 120.00244 * 154.46232 * 14 12 11 17 17 H 1.48498 * 109.47382 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47137 * 299.99266 * 16 14 12 19 19 H 1.48500 * 109.47433 * 59.99627 * 16 14 12 20 20 H 1.09001 * 109.46722 * 270.28429 * 1 2 3 21 21 H 1.08995 * 109.47191 * 30.28389 * 1 2 3 22 22 H 1.09002 * 109.47050 * 150.28881 * 1 2 3 23 23 H 1.08000 * 119.92376 * 359.96991 * 3 2 1 24 24 H 1.07994 * 126.03383 * 0.02562 * 5 4 3 25 25 H 1.07998 * 125.13717 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.46990 * 270.00149 * 8 7 6 27 27 H 1.09000 * 109.46722 * 29.99550 * 8 7 6 28 28 H 1.08997 * 109.47989 * 149.99633 * 8 7 6 29 29 H 1.07994 * 120.21053 * 0.02562 * 10 9 7 30 30 H 0.97005 * 119.99575 * 354.13216 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1776 0.0000 4 6 3.5871 1.1855 -0.0067 5 6 4.5528 2.2211 -0.0144 6 6 5.7732 1.6502 -0.0180 7 7 5.6455 0.2897 -0.0136 8 6 6.7520 -0.6705 -0.0162 9 6 4.3025 -0.0318 -0.0064 10 6 3.6158 -1.2307 -0.0003 11 6 2.2095 -1.2251 0.0059 12 6 1.5002 -2.4439 0.0127 13 1 0.5017 -2.4854 0.4222 14 6 2.0899 -3.5993 -0.5110 15 7 3.0238 -3.5018 -1.4228 16 14 1.5444 -5.2814 0.0909 17 1 2.3169 -6.3345 -0.6158 18 1 1.7858 -5.3865 1.5523 19 1 0.0964 -5.4606 -0.1859 20 1 -0.3633 0.0051 1.0277 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3633 -0.8926 -0.5094 23 1 1.6384 2.1106 -0.0005 24 1 4.3474 3.2813 -0.0161 25 1 6.7104 2.1867 -0.0235 26 1 7.0215 -0.9114 -1.0445 27 1 7.6121 -0.2350 0.4924 28 1 6.4456 -1.5794 0.5017 29 1 4.1555 -2.1661 -0.0003 30 1 3.2475 -2.6353 -1.7971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260784402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = 40.158848 kcal Electronic energy + Delta-G solvation = -13923.934936 eV Core-core repulsion = 11683.809114 eV Total energy + Delta-G solvation = -2240.125823 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13477 -36.66818 -33.70582 -31.76659 -30.36215 -28.43875 -26.52591 -24.64855 -24.39582 -21.08221 -19.53492 -19.21118 -17.54636 -16.04553 -14.89164 -14.44802 -14.12471 -13.81509 -13.19807 -12.95021 -12.68263 -12.34567 -11.96609 -11.77195 -11.67789 -11.45949 -11.12304 -10.97351 -10.54514 -10.40617 -9.73486 -9.70046 -9.34353 -8.89982 -8.43071 -7.25937 -6.89456 -6.55179 -4.30230 2.43884 2.98726 3.17188 3.26822 3.37009 3.81140 3.82834 4.04875 4.67546 5.34347 5.50430 5.67231 5.72668 5.89024 5.95217 6.28402 6.30508 6.50944 6.54654 6.61359 6.77095 6.92010 7.14005 7.22289 7.29264 7.61783 7.76059 7.89852 7.97419 8.12117 8.25435 8.41448 8.45988 8.85733 8.97135 10.10799 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.011195 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.866872 B = 2500.486544 C = 3300.913047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.175 4.175 3 C -0.058 4.058 4 C -0.209 4.209 5 C -0.182 4.182 6 C -0.023 4.023 7 N -0.499 5.499 8 C 0.092 3.908 9 C 0.146 3.854 10 C -0.270 4.270 11 C 0.119 3.881 12 C -0.514 4.514 13 H 0.079 0.921 14 C 0.039 3.961 15 N -0.797 5.797 16 Si 1.061 2.939 17 H -0.275 1.275 18 H -0.275 1.275 19 H -0.276 1.276 20 H 0.044 0.956 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.121 0.879 25 H 0.145 0.855 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 2.869 1.840 4.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.176 4.176 3 C -0.077 4.077 4 C -0.213 4.213 5 C -0.208 4.208 6 C -0.145 4.145 7 N -0.185 5.185 8 C -0.051 4.051 9 C 0.041 3.959 10 C -0.293 4.293 11 C 0.115 3.885 12 C -0.543 4.543 13 H 0.097 0.903 14 C -0.183 4.183 15 N -0.420 5.420 16 Si 0.885 3.115 17 H -0.200 1.200 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.139 0.861 25 H 0.162 0.838 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.111 1.062 1.642 3.674 hybrid contribution -0.036 1.741 0.120 1.745 sum 3.075 2.802 1.761 4.518 Atomic orbital electron populations 1.20461 0.93207 1.00809 0.99971 1.19477 0.94614 0.93027 1.10447 1.19729 0.91657 0.96088 1.00176 1.17787 0.92875 0.92253 1.18355 1.20386 0.91797 0.97260 1.11328 1.21279 0.98304 0.82508 1.12451 1.43652 1.04558 1.05028 1.65307 1.21637 0.88599 0.93051 1.01776 1.18268 0.81342 0.95609 1.00675 1.19792 0.93485 0.93282 1.22786 1.17168 0.90500 0.92013 0.88857 1.20436 1.03301 0.93851 1.36667 0.90326 1.26948 0.93045 1.05167 0.93142 1.70435 1.22980 1.31996 1.16630 0.83697 0.76854 0.73798 0.77128 1.20002 1.20072 1.20143 0.93695 0.94130 0.91801 0.88944 0.86096 0.83767 0.92557 0.91406 0.90775 0.88017 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.37 36.01 0.34 -1.49 16 2 C -0.17 -4.30 5.89 -104.38 -0.61 -4.91 16 3 C -0.06 -1.36 9.65 -39.63 -0.38 -1.74 16 4 C -0.21 -5.07 6.19 -106.65 -0.66 -5.73 16 5 C -0.18 -3.78 10.85 -39.54 -0.43 -4.21 16 6 C -0.02 -0.44 11.34 -16.65 -0.19 -0.63 16 7 N -0.50 -10.55 3.20 -121.72 -0.39 -10.94 16 8 C 0.09 1.53 11.08 59.85 0.66 2.20 16 9 C 0.15 3.64 6.81 -83.94 -0.57 3.07 16 10 C -0.27 -7.18 7.87 -38.70 -0.30 -7.49 16 11 C 0.12 3.18 5.30 -106.81 -0.57 2.62 16 12 C -0.51 -13.53 8.01 -37.91 -0.30 -13.84 16 13 H 0.08 1.99 6.90 -52.49 -0.36 1.63 16 14 C 0.04 0.99 4.92 -17.34 -0.09 0.90 16 15 N -0.80 -21.35 12.31 55.54 0.68 -20.66 16 16 Si 1.06 21.59 30.00 -169.99 -5.10 16.49 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 18 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 22 H 0.06 1.36 6.74 -51.93 -0.35 1.01 16 23 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 24 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 25 H 0.14 2.18 8.06 -52.49 -0.42 1.75 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.10 2.78 6.48 -52.49 -0.34 2.44 16 30 H 0.30 8.39 6.70 -40.82 -0.27 8.12 16 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -29.32 255.72 -7.56 -36.88 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.50 Total: 5.63 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -3.11 Total: -31.25 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.29 Total: -31.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.10 Total: 16.49 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.32 -7.56 -36.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260784402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.040 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds