Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35752 * 119.83238 * 2 1 4 4 C 1.40484 * 120.15199 * 180.31767 * 3 2 1 5 5 C 1.41599 * 133.31920 * 179.67558 * 4 3 2 6 6 C 1.34729 * 107.92733 * 179.97438 * 5 4 3 7 7 N 1.36640 * 109.71191 * 0.02562 * 6 5 4 8 8 C 1.46499 * 125.59375 * 179.97438 * 7 6 5 9 9 C 1.38098 * 108.82308 * 359.97438 * 7 6 5 10 10 C 1.38174 * 133.26820 * 179.97438 * 9 7 6 11 11 C 1.40628 * 119.57600 * 180.02562 * 10 9 7 12 12 C 1.41015 * 119.97054 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00332 * 154.34137 * 12 11 10 14 14 C 1.39890 * 119.99947 * 334.34407 * 12 11 10 15 15 N 1.30883 * 120.00259 * 334.45376 * 14 12 11 16 16 Si 1.86797 * 120.00244 * 154.46232 * 14 12 11 17 17 H 1.48498 * 109.47382 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47137 * 299.99266 * 16 14 12 19 19 H 1.48500 * 109.47433 * 59.99627 * 16 14 12 20 20 H 1.09001 * 109.46722 * 270.28429 * 1 2 3 21 21 H 1.08995 * 109.47191 * 30.28389 * 1 2 3 22 22 H 1.09002 * 109.47050 * 150.28881 * 1 2 3 23 23 H 1.08000 * 119.92376 * 359.96991 * 3 2 1 24 24 H 1.07994 * 126.03383 * 0.02562 * 5 4 3 25 25 H 1.07998 * 125.13717 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.46990 * 270.00149 * 8 7 6 27 27 H 1.09000 * 109.46722 * 29.99550 * 8 7 6 28 28 H 1.08997 * 109.47989 * 149.99633 * 8 7 6 29 29 H 1.07994 * 120.21053 * 0.02562 * 10 9 7 30 30 H 0.97005 * 119.99575 * 354.13216 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1776 0.0000 4 6 3.5871 1.1855 -0.0067 5 6 4.5528 2.2211 -0.0144 6 6 5.7732 1.6502 -0.0180 7 7 5.6455 0.2897 -0.0136 8 6 6.7520 -0.6705 -0.0162 9 6 4.3025 -0.0318 -0.0064 10 6 3.6158 -1.2307 -0.0003 11 6 2.2095 -1.2251 0.0059 12 6 1.5002 -2.4439 0.0127 13 1 0.5017 -2.4854 0.4222 14 6 2.0899 -3.5993 -0.5110 15 7 3.0238 -3.5018 -1.4228 16 14 1.5444 -5.2814 0.0909 17 1 2.3169 -6.3345 -0.6158 18 1 1.7858 -5.3865 1.5523 19 1 0.0964 -5.4606 -0.1859 20 1 -0.3633 0.0051 1.0277 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3633 -0.8926 -0.5094 23 1 1.6384 2.1106 -0.0005 24 1 4.3474 3.2813 -0.0161 25 1 6.7104 2.1867 -0.0235 26 1 7.0215 -0.9114 -1.0445 27 1 7.6121 -0.2350 0.4924 28 1 6.4456 -1.5794 0.5017 29 1 4.1555 -2.1661 -0.0003 30 1 3.2475 -2.6353 -1.7971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260784402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = 24.771602 kcal Electronic energy + Delta-G solvation = -13924.602177 eV Core-core repulsion = 11683.809114 eV Total energy + Delta-G solvation = -2240.793064 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.85237 -38.48690 -35.55864 -33.39516 -32.15902 -30.24752 -28.18601 -26.44534 -26.07275 -22.93355 -21.34600 -20.86852 -19.38407 -17.72157 -16.68609 -16.02821 -15.82869 -15.59656 -14.88544 -14.66650 -14.38982 -13.95852 -13.75892 -13.29899 -13.23348 -13.12553 -12.77186 -12.66857 -12.26870 -11.97742 -11.57909 -11.46884 -11.18888 -10.76870 -10.22827 -9.23667 -8.75079 -8.31401 -6.28157 0.64888 1.13755 1.50660 1.61481 1.79137 2.12687 2.24945 2.35535 2.79649 3.59801 4.01703 4.18541 4.27137 4.39833 4.54437 4.61420 4.69774 4.79767 4.88288 4.96505 5.00556 5.17572 5.34682 5.42377 5.47489 5.69278 5.81512 6.04498 6.17014 6.27730 6.35196 6.52997 6.84270 6.93712 7.05478 8.09093 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.011195 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.866872 B = 2500.486544 C = 3300.913047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.194 4.194 3 C -0.067 4.067 4 C -0.223 4.223 5 C -0.207 4.207 6 C 0.003 3.997 7 N -0.503 5.503 8 C 0.085 3.915 9 C 0.110 3.890 10 C -0.284 4.284 11 C 0.086 3.914 12 C -0.544 4.544 13 H 0.080 0.920 14 C 0.002 3.998 15 N -0.822 5.822 16 Si 1.113 2.887 17 H -0.274 1.274 18 H -0.266 1.266 19 H -0.254 1.254 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.121 0.879 24 H 0.152 0.848 25 H 0.198 0.802 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 4.222 2.388 5.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.196 4.196 3 C -0.086 4.086 4 C -0.227 4.227 5 C -0.232 4.232 6 C -0.120 4.120 7 N -0.188 5.188 8 C -0.056 4.056 9 C 0.004 3.996 10 C -0.307 4.307 11 C 0.082 3.918 12 C -0.572 4.572 13 H 0.098 0.902 14 C -0.214 4.214 15 N -0.445 5.445 16 Si 0.931 3.069 17 H -0.199 1.199 18 H -0.191 1.191 19 H -0.179 1.179 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.139 0.861 24 H 0.169 0.831 25 H 0.215 0.785 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.932 2.428 2.190 5.114 hybrid contribution -0.121 1.527 -0.039 1.533 sum 3.811 3.955 2.151 5.898 Atomic orbital electron populations 1.20426 0.90889 1.01442 1.00970 1.19903 0.96598 0.92696 1.10359 1.20097 0.92028 0.96909 0.99548 1.18383 0.93786 0.93271 1.17252 1.20770 0.91407 0.98271 1.12734 1.22147 1.00059 0.81568 1.08243 1.44058 1.04068 1.06661 1.64060 1.21911 0.88552 0.92276 1.02850 1.18456 0.83671 0.95434 1.02086 1.19738 0.93878 0.93260 1.23866 1.17574 0.91044 0.93368 0.89829 1.20610 1.03778 0.94676 1.38161 0.90184 1.28375 0.92206 1.08688 0.92120 1.70558 1.25027 1.30499 1.18428 0.83064 0.77592 0.69340 0.76940 1.19911 1.19110 1.17850 0.92410 0.91574 0.92972 0.86090 0.83053 0.78536 0.91655 0.86899 0.92304 0.90243 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.33 9.37 71.24 0.67 -2.66 16 2 C -0.19 -9.69 5.89 -19.71 -0.12 -9.81 16 3 C -0.07 -3.14 9.65 22.24 0.21 -2.92 16 4 C -0.22 -10.62 6.19 -21.18 -0.13 -10.75 16 5 C -0.21 -7.97 10.85 22.29 0.24 -7.73 16 6 C 0.00 0.11 11.34 83.14 0.94 1.05 16 7 N -0.50 -20.38 3.20 -539.03 -1.72 -22.11 16 8 C 0.09 2.68 11.08 127.77 1.42 4.10 16 9 C 0.11 5.52 6.81 38.87 0.26 5.78 16 10 C -0.28 -15.79 7.87 22.84 0.18 -15.61 16 11 C 0.09 4.77 5.30 -21.28 -0.11 4.66 16 12 C -0.54 -29.75 8.01 23.35 0.19 -29.57 16 13 H 0.08 4.19 6.90 -2.91 -0.02 4.17 16 14 C 0.00 0.08 4.92 85.23 0.42 0.50 16 15 N -0.82 -46.13 12.31 21.82 0.27 -45.86 16 16 Si 1.11 44.20 30.00 68.60 2.06 46.26 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 20 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 21 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 22 H 0.05 2.24 6.74 -2.39 -0.02 2.22 16 23 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 24 H 0.15 4.80 8.06 -2.91 -0.02 4.78 16 25 H 0.20 4.67 8.06 -2.91 -0.02 4.64 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.08 4.64 6.48 -2.91 -0.02 4.62 16 30 H 0.28 16.67 6.70 -92.70 -0.62 16.05 16 Total: -1.00 -66.39 255.72 6.05 -60.34 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.28 Total: 24.33 kcal Atomic # 6 Polarization: -67.13 SS G_CDS: 4.17 Total: -62.96 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -1.46 Total: -67.97 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.06 Total: 46.26 kcal Total: -66.39 6.05 -60.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260784402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.107 kcal (2) G-P(sol) polarization free energy of solvation -66.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds