Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36475 * 120.09864 * 2 1 4 4 C 1.38893 * 120.59211 * 179.97438 * 3 2 1 5 5 C 1.37999 * 120.70214 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.05377 * 180.02562 * 5 4 3 7 7 C 1.38890 * 119.89029 * 0.27631 * 5 4 3 8 8 N 1.38050 * 132.79846 * 179.69457 * 7 5 4 9 9 H 0.96996 * 125.60412 * 359.97438 * 8 7 5 10 10 C 1.38321 * 108.79179 * 180.02562 * 8 7 5 11 11 C 1.39925 * 125.68661 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00133 * 0.02562 * 11 10 8 13 13 C 1.40194 * 119.99610 * 179.97438 * 11 10 8 14 14 N 1.30743 * 119.99994 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99802 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47410 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47354 * 119.99921 * 15 13 11 18 18 H 1.48506 * 109.46952 * 240.00121 * 15 13 11 19 19 C 1.39123 * 108.61840 * 359.51006 * 10 8 7 20 20 C 1.40444 * 120.10228 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47172 * 90.00274 * 1 2 3 22 22 H 1.08998 * 109.47163 * 209.99735 * 1 2 3 23 23 H 1.08999 * 109.47368 * 329.99699 * 1 2 3 24 24 H 1.08002 * 119.69886 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.64847 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47152 * 90.00174 * 6 5 4 27 27 H 1.09001 * 109.46980 * 330.00274 * 6 5 4 28 28 H 1.09004 * 109.47113 * 210.00255 * 6 5 4 29 29 H 0.97001 * 119.99797 * 180.02562 * 14 13 11 30 30 H 1.08002 * 126.25300 * 179.89989 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1807 0.0000 4 6 3.5803 1.1927 0.0005 5 6 4.2950 0.0122 0.0016 6 6 5.8018 0.0423 0.0028 7 6 3.6235 -1.2035 -0.0036 8 7 4.0567 -2.5143 -0.0095 9 1 4.9827 -2.8030 -0.0112 10 6 2.9532 -3.3482 -0.0136 11 6 2.9872 -4.7471 -0.0194 12 1 3.9354 -5.2642 -0.0206 13 6 1.7905 -5.4773 -0.0226 14 7 0.6427 -4.8512 -0.0206 15 14 1.8358 -7.3446 -0.0297 16 1 3.2475 -7.8056 -0.0316 17 1 1.1477 -7.8611 1.1806 18 1 1.1484 -7.8519 -1.2444 19 6 1.8040 -2.5643 0.0009 20 6 2.2114 -1.2150 0.0005 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6481 2.1141 -0.0004 25 1 4.1064 2.1359 0.0001 26 1 6.1643 0.0499 1.0307 27 1 6.1477 0.9391 -0.5112 28 1 6.1832 -0.8405 -0.5105 29 1 -0.1853 -5.3564 -0.0224 30 1 0.7855 -2.9238 0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260837880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = 10.026974 kcal Electronic energy + Delta-G solvation = -13763.392539 eV Core-core repulsion = 11521.960100 eV Total energy + Delta-G solvation = -2241.432439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52582 -37.82162 -35.47246 -34.55978 -30.68890 -30.18815 -29.84808 -26.86233 -25.34952 -22.38698 -22.17751 -20.42275 -19.10985 -17.39385 -17.17296 -15.84866 -15.61865 -15.22825 -15.01187 -14.24946 -14.00131 -13.74995 -13.73094 -13.47122 -13.29540 -12.94188 -12.92871 -12.51812 -12.33372 -11.91382 -11.74818 -11.61856 -11.28135 -11.16694 -9.85870 -8.90910 -8.51820 -8.10867 -6.30276 0.58774 1.13073 1.39995 1.42840 1.56333 2.17357 2.27308 2.87041 3.24910 3.46488 4.17019 4.29162 4.49632 4.56497 4.62981 4.83842 4.90159 4.93325 4.97527 5.07698 5.11302 5.22803 5.35699 5.43225 5.66018 5.84516 5.92983 6.01290 6.13519 6.23362 6.58142 6.79841 6.87780 7.12223 7.42928 8.35208 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.009204 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.382289 B = 3041.517850 C = 3747.445003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.139 4.139 4 C -0.167 4.167 5 C -0.105 4.105 6 C -0.097 4.097 7 C 0.022 3.978 8 N -0.621 5.621 9 H 0.407 0.593 10 C 0.233 3.767 11 C -0.475 4.475 12 H 0.085 0.915 13 C 0.026 3.974 14 N -0.813 5.813 15 Si 1.005 2.995 16 H -0.255 1.255 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.359 4.359 20 C -0.081 4.081 21 H 0.059 0.941 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.287 0.713 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 4.069 0.016 5.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.158 4.158 4 C -0.186 4.186 5 C -0.108 4.108 6 C -0.154 4.154 7 C -0.083 4.083 8 N -0.231 5.231 9 H 0.244 0.756 10 C 0.126 3.874 11 C -0.508 4.508 12 H 0.103 0.897 13 C -0.189 4.189 14 N -0.438 5.438 15 Si 0.825 3.175 16 H -0.178 1.178 17 H -0.190 1.190 18 H -0.190 1.190 19 C -0.382 4.382 20 C -0.086 4.086 21 H 0.078 0.922 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.150 0.850 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.547 4.005 0.015 5.350 hybrid contribution 0.167 -1.023 -0.018 1.036 sum 3.714 2.983 -0.002 4.764 Atomic orbital electron populations 1.20494 0.91315 1.01603 1.01285 1.19402 0.96132 0.91719 1.05628 1.20521 0.94499 0.96575 1.04213 1.20658 0.93742 0.96453 1.07759 1.19159 0.96427 0.89934 1.05275 1.20618 0.90043 1.02621 1.02134 1.18446 0.93846 0.85401 1.10572 1.42066 1.07455 1.03883 1.69660 0.75638 1.18456 0.84716 0.90930 0.93337 1.19085 0.95156 0.89219 1.47371 0.89697 1.26830 0.93667 1.06647 0.91794 1.69829 0.99551 1.39420 1.35049 0.84810 0.79785 0.74060 0.78855 1.17815 1.19024 1.19038 1.21690 0.99055 0.89528 1.27964 1.18722 0.92877 0.94540 1.02425 0.92206 0.94013 0.90288 0.84967 0.84304 0.91207 0.89749 0.93051 0.90222 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.52 9.92 71.24 0.71 -2.81 16 2 C -0.13 -5.79 5.90 -19.74 -0.12 -5.91 16 3 C -0.14 -5.35 9.61 22.01 0.21 -5.14 16 4 C -0.17 -6.14 9.68 22.37 0.22 -5.92 16 5 C -0.10 -4.19 5.89 -19.76 -0.12 -4.30 16 6 C -0.10 -2.93 10.02 71.24 0.71 -2.22 16 7 C 0.02 1.04 6.90 39.05 0.27 1.31 16 8 N -0.62 -30.07 6.22 -180.16 -1.12 -31.19 16 9 H 0.41 16.78 8.79 -92.71 -0.81 15.96 16 10 C 0.23 12.89 6.83 38.74 0.26 13.15 16 11 C -0.48 -25.16 9.45 23.15 0.22 -24.94 16 12 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 13 C 0.03 1.31 5.50 85.33 0.47 1.78 16 14 N -0.81 -42.87 10.18 21.87 0.22 -42.65 16 15 Si 1.01 37.37 29.56 68.60 2.03 39.40 16 16 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 17 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 18 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 19 C -0.36 -20.75 9.37 23.15 0.22 -20.53 16 20 C -0.08 -4.25 5.97 -21.35 -0.13 -4.38 16 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.04 1.76 7.81 -2.39 -0.02 1.75 16 23 H 0.08 2.50 8.08 -2.39 -0.02 2.48 16 24 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 25 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 28 H 0.05 1.52 7.91 -2.38 -0.02 1.50 16 29 H 0.29 13.55 8.29 -92.71 -0.77 12.78 16 30 H 0.14 8.70 5.55 -2.91 -0.02 8.69 16 Total: -1.00 -63.19 257.09 4.39 -58.80 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: 0.34 Total: 35.54 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 2.93 Total: -59.90 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -0.90 Total: -73.84 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -63.19 4.39 -58.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.827 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds