Wall clock time and date at job start Mon Mar 30 2020 03:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46754 * 2 1 4 4 N 1.46497 * 109.47105 * 120.00053 * 2 1 3 5 5 C 1.36937 * 119.99886 * 295.29475 * 4 2 1 6 6 H 1.08004 * 120.00257 * 234.90050 * 5 4 2 7 7 C 1.38819 * 120.00180 * 54.90415 * 5 4 2 8 8 N 1.31620 * 119.99644 * 37.59182 * 7 5 4 9 9 Si 1.86792 * 119.99857 * 217.59375 * 7 5 4 10 10 H 1.48502 * 109.47411 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47165 * 120.00049 * 9 7 5 12 12 H 1.48508 * 109.47088 * 239.99631 * 9 7 5 13 13 C 1.46500 * 120.00039 * 115.29732 * 4 2 1 14 14 H 1.09002 * 108.85141 * 0.69416 * 13 4 2 15 15 C 1.52939 * 108.88663 * 242.12197 * 13 4 2 16 16 C 1.54996 * 109.04434 * 208.99335 * 15 13 4 17 17 S 1.83987 * 100.81908 * 41.60847 * 16 15 13 18 18 C 1.53708 * 108.88760 * 119.27424 * 13 4 2 19 19 H 1.08996 * 109.47730 * 309.38763 * 1 2 3 20 20 H 1.09001 * 109.46868 * 189.39137 * 1 2 3 21 21 H 1.09000 * 109.47528 * 69.39303 * 1 2 3 22 22 H 1.09006 * 109.46979 * 240.00195 * 2 1 3 23 23 H 1.08996 * 109.47327 * 54.40955 * 3 2 1 24 24 H 1.09002 * 109.46866 * 174.40283 * 3 2 1 25 25 H 1.08999 * 109.47349 * 294.40662 * 3 2 1 26 26 H 0.96998 * 119.99649 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.60757 * 329.03359 * 15 13 4 28 28 H 1.09006 * 109.60289 * 89.17666 * 15 13 4 29 29 H 1.09000 * 111.23203 * 283.70509 * 16 15 13 30 30 H 1.09000 * 111.11742 * 159.46368 * 16 15 13 31 31 H 1.08999 * 110.34141 * 242.49182 * 18 13 4 32 32 H 1.08991 * 110.34013 * 4.75098 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7688 -0.1693 2.4376 6 1 2.5863 0.0239 3.1165 7 6 0.4651 0.1110 2.8235 8 7 -0.5145 -0.6909 2.4635 9 14 0.1014 1.6261 3.8537 10 1 1.3658 2.3566 4.1235 11 1 -0.8353 2.5123 3.1171 12 1 -0.5157 1.2136 5.1400 13 6 2.7736 -1.9389 1.0642 14 1 2.8759 -2.1785 0.0058 15 6 1.9976 -3.0623 1.7533 16 6 2.9995 -4.1258 2.2704 17 16 4.3310 -3.0482 2.9420 18 6 4.1735 -1.7396 1.6668 19 1 -0.3634 0.6521 0.7942 20 1 -0.3633 -1.0139 0.1677 21 1 -0.3634 0.3617 -0.9619 22 1 1.8933 -0.5138 -0.8901 23 1 1.5971 1.9844 0.8357 24 1 3.1253 1.4442 0.1002 25 1 1.7607 1.9266 -0.9358 26 1 -1.4254 -0.4953 2.7335 27 1 1.4307 -2.6551 2.5905 28 1 1.3130 -3.5238 1.0415 29 1 3.3707 -4.7476 1.4556 30 1 2.5540 -4.7359 3.0561 31 1 4.9376 -1.8642 0.8995 32 1 4.2521 -0.7534 2.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:14 Heat of formation + Delta-G solvation = 9.893194 kcal Electronic energy + Delta-G solvation = -13603.966705 eV Core-core repulsion = 11497.972416 eV Total energy + Delta-G solvation = -2105.994289 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98742 -35.66696 -33.61181 -31.48885 -29.27166 -27.62160 -26.39396 -24.59621 -21.51444 -20.99714 -17.96966 -17.45725 -16.98276 -16.38336 -15.63590 -15.16880 -14.53695 -14.41986 -14.07826 -13.77848 -13.16363 -13.11056 -12.89184 -12.78508 -12.60488 -12.51658 -12.37407 -12.06076 -11.75766 -11.59681 -11.38217 -11.31362 -10.67085 -9.89631 -8.58055 -8.37579 -7.65940 -5.45030 1.15438 1.38382 1.48720 1.55640 1.61071 2.52790 3.14402 3.54583 4.01788 4.29270 4.38860 4.43457 4.48987 4.53442 4.77077 4.79240 4.80822 4.90815 5.03658 5.08360 5.24257 5.36932 5.40619 5.45169 5.72431 5.80263 5.86735 6.05886 6.67510 7.32922 7.88018 8.58235 9.03463 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.012913 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.660211 B = 2167.759807 C = 2457.338929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.171 3.829 3 C -0.137 4.137 4 N -0.582 5.582 5 C -0.280 4.280 6 H 0.030 0.970 7 C 0.030 3.970 8 N -0.857 5.857 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.296 1.296 13 C 0.162 3.838 14 H 0.067 0.933 15 C -0.119 4.119 16 C -0.046 4.046 17 S -0.361 6.361 18 C -0.051 4.051 19 H 0.037 0.963 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.250 0.750 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 -2.684 -5.426 7.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 C -0.195 4.195 4 N -0.304 5.304 5 C -0.410 4.410 6 H 0.047 0.953 7 C -0.174 4.174 8 N -0.494 5.494 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.223 1.223 13 C 0.055 3.945 14 H 0.086 0.914 15 C -0.160 4.160 16 C -0.194 4.194 17 S -0.137 6.137 18 C -0.201 4.201 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.018 -2.813 -4.475 7.288 hybrid contribution -1.388 1.034 0.009 1.731 sum 3.630 -1.779 -4.466 6.024 Atomic orbital electron populations 1.22219 0.97967 1.01168 0.97646 1.20559 0.92541 0.92301 0.88106 1.21937 1.00202 0.97511 0.99876 1.44133 1.63381 1.21119 1.01760 1.18191 0.89198 1.39393 0.94173 0.95281 1.25587 0.97440 0.98150 0.96255 1.70496 1.00265 1.32873 1.45774 0.86380 0.77795 0.84066 0.78929 1.19924 1.21241 1.22291 1.21067 0.88764 0.87506 0.97198 0.91448 1.22600 0.97825 0.94153 1.01397 1.24238 0.94460 0.97869 1.02817 1.87445 1.52251 1.27285 1.46716 1.24380 1.01093 0.97930 0.96713 0.94367 0.94120 0.95151 0.92275 0.95043 0.93413 0.92221 0.94010 0.91590 0.91916 0.87622 0.88130 0.88736 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 7.65 71.98 0.55 -5.11 16 2 C 0.17 6.90 3.36 44.99 0.15 7.05 16 3 C -0.14 -5.10 8.98 71.98 0.65 -4.45 16 4 N -0.58 -25.84 2.21 -653.03 -1.44 -27.28 16 5 C -0.28 -14.21 6.32 84.04 0.53 -13.68 16 6 H 0.03 1.63 7.27 -2.91 -0.02 1.61 16 7 C 0.03 1.56 3.47 84.86 0.29 1.85 16 8 N -0.86 -45.39 10.61 21.65 0.23 -45.16 16 9 Si 0.90 42.37 29.68 68.60 2.04 44.41 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 13 C 0.16 6.29 3.11 45.21 0.14 6.43 16 14 H 0.07 2.34 7.51 -2.39 -0.02 2.33 16 15 C -0.12 -4.66 5.90 31.26 0.18 -4.47 16 16 C -0.05 -1.47 7.52 72.67 0.55 -0.92 16 17 S -0.36 -13.38 23.22 -56.49 -1.31 -14.69 16 18 C -0.05 -1.88 6.85 72.22 0.49 -1.38 16 19 H 0.04 1.83 5.54 -2.39 -0.01 1.82 16 20 H 0.04 1.92 7.33 -2.39 -0.02 1.91 16 21 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.06 2.13 7.53 -2.38 -0.02 2.11 16 23 H 0.03 1.30 7.73 -2.39 -0.02 1.29 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 27 H 0.07 3.22 7.02 -2.39 -0.02 3.20 16 28 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.10 3.05 8.14 -2.39 -0.02 3.04 16 31 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.08 3.35 6.75 -2.39 -0.02 3.34 16 Total: -1.00 -54.30 262.20 4.13 -50.17 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.07 Total: 7.24 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.54 Total: -14.69 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.21 Total: -72.44 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.04 Total: 44.41 kcal Atomic # 16 Polarization: -13.38 SS G_CDS: -1.31 Total: -14.69 kcal Total: -54.30 4.13 -50.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.062 kcal (2) G-P(sol) polarization free energy of solvation -54.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds