Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34638 * 116.99819 * 2 1 4 4 O 1.21513 * 120.00208 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99834 * 179.72501 * 3 2 1 6 6 C 1.47067 * 136.05683 * 359.91490 * 5 3 2 7 7 C 1.53752 * 87.88704 * 152.95865 * 6 5 3 8 8 O 1.42910 * 114.26731 * 139.79150 * 7 6 5 9 9 C 1.42893 * 113.99935 * 116.47182 * 8 7 6 10 10 C 1.50708 * 109.47071 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99496 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00070 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00252 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00044 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47319 * 90.00334 * 14 12 10 16 16 H 1.48503 * 109.46998 * 210.00088 * 14 12 10 17 17 H 1.48497 * 109.47247 * 330.00071 * 14 12 10 18 18 C 1.47062 * 136.05657 * 180.27266 * 5 3 2 19 19 H 1.08997 * 109.47282 * 59.99663 * 1 2 3 20 20 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47240 * 299.99654 * 1 2 3 22 22 H 1.09007 * 113.46523 * 267.69131 * 6 5 3 23 23 H 1.09001 * 113.47129 * 38.12710 * 6 5 3 24 24 H 1.09004 * 114.39407 * 272.67178 * 7 6 5 25 25 H 1.09004 * 109.47819 * 299.99853 * 9 8 7 26 26 H 1.09005 * 109.47608 * 60.00113 * 9 8 7 27 27 H 0.97001 * 120.00409 * 179.97438 * 13 12 10 28 28 H 1.09000 * 113.47409 * 321.87078 * 18 5 3 29 29 H 1.09006 * 113.46707 * 92.25431 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2702 0.0056 6 6 4.5200 0.3065 0.0140 7 6 5.3770 1.3748 -0.6848 8 8 6.7242 1.4475 -0.2136 9 6 7.7039 1.1225 -1.2017 10 6 9.0808 1.2307 -0.5986 11 1 9.1961 1.5192 0.4356 12 6 10.1932 0.9624 -1.3676 13 7 11.3948 1.0573 -0.8415 14 14 9.9938 0.4640 -3.1569 15 1 10.0018 1.6776 -4.0126 16 1 11.1150 -0.4266 -3.5506 17 1 8.7062 -0.2551 -3.3299 18 6 4.4131 2.3448 0.0124 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.8699 0.0561 1.0155 23 1 4.3352 -0.5744 -0.6009 24 1 5.3004 1.3730 -1.7721 25 1 7.5410 0.1039 -1.5538 26 1 7.6184 1.8146 -2.0396 27 1 12.1775 0.8681 -1.3825 28 1 4.1374 3.2005 -0.6038 29 1 4.7342 2.6325 1.0136 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261101745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = -76.890852 kcal Electronic energy + Delta-G solvation = -14093.002718 eV Core-core repulsion = 11404.659226 eV Total energy + Delta-G solvation = -2688.343493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.65526 -39.08803 -36.42583 -35.81380 -32.67486 -29.89430 -28.04451 -26.95870 -25.96827 -22.31552 -21.83392 -20.05840 -18.01606 -17.18073 -17.03224 -16.69474 -16.08678 -14.90821 -14.68998 -14.32334 -13.78820 -13.50865 -13.15819 -13.03058 -12.48334 -12.40980 -12.10627 -11.39015 -11.12619 -10.98036 -10.88684 -10.67695 -10.59594 -9.95887 -9.32299 -9.00203 -8.84322 -8.58697 -6.19264 -4.19871 1.90631 2.76491 3.19652 3.26852 3.27504 3.81995 4.28137 4.38736 4.57329 4.97424 4.98607 5.05196 5.12184 5.25289 5.31883 5.52064 5.55522 5.67361 5.68692 5.97713 6.23011 6.47243 6.85819 7.46988 7.61844 7.82442 8.18803 8.51267 8.90977 9.38477 10.93406 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.068587 B = 0.005424 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.140200 B = 5160.539014 C = 5311.473057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.680 3.320 4 O -0.576 6.576 5 N -0.632 5.632 6 C 0.084 3.916 7 C 0.053 3.947 8 O -0.355 6.355 9 C 0.167 3.833 10 C -0.524 4.524 11 H 0.084 0.916 12 C 0.074 3.926 13 N -0.892 5.892 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.126 3.874 19 H 0.062 0.938 20 H 0.102 0.898 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.008 0.992 26 H 0.004 0.996 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.008 -2.915 -0.885 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.283 6.283 3 C 0.436 3.564 4 O -0.466 6.466 5 N -0.375 5.375 6 C -0.039 4.039 7 C -0.007 4.007 8 O -0.272 6.272 9 C 0.092 3.908 10 C -0.562 4.562 11 H 0.102 0.898 12 C -0.129 4.129 13 N -0.530 5.530 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.190 1.190 18 C 0.005 3.995 19 H 0.081 0.919 20 H 0.120 0.880 21 H 0.081 0.919 22 H 0.116 0.884 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.249 -2.620 -0.737 17.462 hybrid contribution -0.223 -0.361 -1.131 1.208 sum -17.472 -2.981 -1.867 17.822 Atomic orbital electron populations 1.23185 0.74545 1.03362 1.02655 1.86264 1.23904 1.30983 1.87167 1.17164 0.80935 0.82071 0.76225 1.90991 1.63488 1.35154 1.56926 1.47707 1.00504 1.13901 1.75391 1.23784 0.82714 0.94769 1.02614 1.23668 0.84642 0.94471 0.97967 1.87985 1.11561 1.89006 1.38659 1.20773 0.88015 0.94097 0.87946 1.20846 0.87134 1.47619 1.00587 0.89793 1.24760 0.94871 0.94822 0.98398 1.69864 0.97735 1.48586 1.36809 0.86858 0.78393 0.79206 0.85332 1.19864 1.20719 1.19022 1.23299 0.82137 0.91539 1.02527 0.91918 0.87996 0.91916 0.88418 0.90042 0.88334 0.97397 0.97830 0.92227 0.89711 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.56 101.05 1.07 1.60 15 2 O -0.37 -4.98 10.59 -40.32 -0.43 -5.41 15 3 C 0.68 10.78 8.96 54.06 0.48 11.26 15 4 O -0.58 -10.48 16.91 -19.28 -0.33 -10.80 15 5 N -0.63 -9.47 3.69 -190.95 -0.70 -10.17 15 6 C 0.08 1.18 8.51 -8.37 -0.07 1.11 15 7 C 0.05 0.84 4.68 -26.09 -0.12 0.72 15 8 O -0.35 -7.36 10.38 -35.23 -0.37 -7.73 15 9 C 0.17 3.89 4.60 36.01 0.17 4.05 15 10 C -0.52 -14.77 9.99 -34.44 -0.34 -15.11 15 11 H 0.08 2.60 8.06 -52.49 -0.42 2.17 15 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 13 N -0.89 -26.64 13.96 55.43 0.77 -25.86 15 14 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 15 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.27 -5.86 6.54 56.52 0.37 -5.49 15 18 C 0.13 1.81 8.45 -8.51 -0.07 1.74 15 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.10 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.10 1.45 7.88 -51.93 -0.41 1.04 15 25 H 0.01 0.19 7.20 -51.93 -0.37 -0.19 15 26 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 29 H 0.10 1.37 8.14 -51.93 -0.42 0.94 15 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -32.42 260.96 -4.50 -36.92 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.72 Total: -3.99 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 1.01 Total: 7.36 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.07 Total: -36.03 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -1.12 Total: -23.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.42 -4.50 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.971 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds